Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.42■□□□□ 0.38
Sdc4O35988 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.42■□□□□ 0.38
Sdc4O35988 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC17.42■□□□□ 0.38
Sdc4O35988 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Sdc4O35988 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sdc4O35988 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Sdc4O35988 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Sdc4O35988 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Sdc4O35988 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Sdc4O35988 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sdc4O35988 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
Sdc4O35988 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.4■□□□□ 0.38
Sdc4O35988 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.4■□□□□ 0.38
Sdc4O35988 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.4■□□□□ 0.38
Sdc4O35988 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.4■□□□□ 0.38
Sdc4O35988 Gm11950-201ENSMUST00000121615 838 ntBASIC17.4■□□□□ 0.38
Sdc4O35988 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.4■□□□□ 0.38
Sdc4O35988 Gm27704-201ENSMUST00000185094 107 ntBASIC17.4■□□□□ 0.38
Sdc4O35988 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.4■□□□□ 0.38
Sdc4O35988 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Sdc4O35988 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.4■□□□□ 0.38
Sdc4O35988 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Sdc4O35988 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sdc4O35988 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sdc4O35988 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
Sdc4O35988 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.39■□□□□ 0.37
Sdc4O35988 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.39■□□□□ 0.37
Sdc4O35988 Gm6623-201ENSMUST00000173570 544 ntBASIC17.39■□□□□ 0.37
Sdc4O35988 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Sdc4O35988 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.39■□□□□ 0.37
Sdc4O35988 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.39■□□□□ 0.37
Sdc4O35988 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
Sdc4O35988 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sdc4O35988 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Sdc4O35988 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.38■□□□□ 0.37
Sdc4O35988 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
Sdc4O35988 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.38■□□□□ 0.37
Sdc4O35988 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
Sdc4O35988 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sdc4O35988 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Sdc4O35988 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Sdc4O35988 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Sdc4O35988 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sdc4O35988 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC17.37■□□□□ 0.37
Sdc4O35988 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms