Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.1■□□□□ 0.17
Clk3O35492 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
Clk3O35492 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.1■□□□□ 0.17
Clk3O35492 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.1■□□□□ 0.17
Clk3O35492 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC16.1■□□□□ 0.17
Clk3O35492 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC16.1■□□□□ 0.17
Clk3O35492 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.1■□□□□ 0.17
Clk3O35492 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.1■□□□□ 0.17
Clk3O35492 Gm10812-201ENSMUST00000099864 546 ntBASIC16.1■□□□□ 0.17
Clk3O35492 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16.1■□□□□ 0.17
Clk3O35492 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Clk3O35492 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Clk3O35492 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Clk3O35492 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Clk3O35492 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.09■□□□□ 0.17
Clk3O35492 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.09■□□□□ 0.17
Clk3O35492 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Clk3O35492 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Gm13216-201ENSMUST00000117145 591 ntBASIC16.09■□□□□ 0.17
Clk3O35492 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.09■□□□□ 0.17
Clk3O35492 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Clk3O35492 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Clk3O35492 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Clk3O35492 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Clk3O35492 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
Clk3O35492 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Clk3O35492 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.08■□□□□ 0.16
Clk3O35492 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Clk3O35492 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC16.07■□□□□ 0.16
Clk3O35492 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.07■□□□□ 0.16
Clk3O35492 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Gm6576-201ENSMUST00000169678 883 ntBASIC16.07■□□□□ 0.16
Clk3O35492 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Gm43183-201ENSMUST00000200632 547 ntBASIC16.07■□□□□ 0.16
Clk3O35492 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Clk3O35492 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Clk3O35492 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Clk3O35492 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Clk3O35492 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.06■□□□□ 0.16
Clk3O35492 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
Clk3O35492 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Clk3O35492 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms