Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Dio3-201ENSMUST00000097228 1449 ntBASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Pcdh1F7BJK1 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Alkbh1-212ENSMUST00000185301 408 ntBASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Gm4968-201ENSMUST00000071458 858 ntBASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pcdh1F7BJK1 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Gm2559-201ENSMUST00000201323 363 ntBASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 AC166341.7-201ENSMUST00000221698 126 ntBASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.22■□□□□ 0.03
Pcdh1F7BJK1 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 AL590614.2-201ENSMUST00000225374 1937 ntBASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 AC163280.1-201ENSMUST00000228194 1100 ntBASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Pcdh1F7BJK1 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC15.21■□□□□ 0.02
Pcdh1F7BJK1 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Pcdh1F7BJK1 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Pcdh1F7BJK1 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdh1F7BJK1 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms