Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL5A1P20908 AL008638.3-201ENST00000623027 5182 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A1P20908 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A1P20908 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL5A1P20908 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A1P20908 RPL26P29-201ENST00000415623 438 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 DSTNP5-201ENST00000427921 523 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A1P20908 GYG1P1-201ENST00000460864 698 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 AL603882.1-201ENST00000463059 681 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 RN7SL51P-201ENST00000468230 285 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.45□□□□□ -1.54
COL5A1P20908 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 AP004607.2-201ENST00000533949 322 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC5.45□□□□□ -1.54
COL5A1P20908 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.45□□□□□ -1.54
COL5A1P20908 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A1P20908 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.45□□□□□ -1.54
COL5A1P20908 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL5A1P20908 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.45□□□□□ -1.54
COL5A1P20908 ABCA11P-202ENST00000504019 2110 ntBASIC5.45□□□□□ -1.54
COL5A1P20908 MFSD8-219ENST00000641228 2559 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC068733.2-201ENST00000605434 1418 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.44□□□□□ -1.54
COL5A1P20908 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 OLMALINC-203ENST00000641087 3779 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 RN7SKP213-201ENST00000410746 298 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.44□□□□□ -1.54
COL5A1P20908 RPS11P7-201ENST00000442125 465 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AL389915.2-201ENST00000454576 441 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 NDUFAF4P3-201ENST00000456468 525 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC079841.1-201ENST00000481228 950 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 CEACAMP10-202ENST00000495431 496 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.44□□□□□ -1.54
COL5A1P20908 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 AC018552.1-201ENST00000562099 811 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 MIR4330-201ENST00000579077 105 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AF230666.2-201ENST00000602328 725 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC010245.2-201ENST00000606908 1167 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC112255.1-201ENST00000624070 2493 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 AL359195.2-201ENST00000623657 4412 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 AC123769.2-201ENST00000624332 5984 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC022893.2-201ENST00000564832 3296 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.44□□□□□ -1.54
COL5A1P20908 RNU1-106P-201ENST00000384382 164 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AL121977.1-201ENST00000401636 979 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 AC092651.1-201ENST00000426110 312 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 CEACAMP7-201ENST00000444105 496 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 RPS23P9-201ENST00000448848 438 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.44□□□□□ -1.54
COL5A1P20908 AC072052.1-201ENST00000496556 306 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL5A1P20908 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.44□□□□□ -1.54
COL5A1P20908 NMNAT1P5-201ENST00000559657 841 ntBASIC5.44□□□□□ -1.54
COL5A1P20908 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 197 ms