Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AL137058.3-201ENST00000624531 3099 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.53□□□□□ -1.52
CLDN9O95484 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 GTF2IP4-201ENST00000453092 2054 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CLDN9O95484 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC5.53□□□□□ -1.52
CLDN9O95484 RNA5SP453-201ENST00000362503 119 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 RN7SKP186-201ENST00000365371 303 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 MIR130A-201ENST00000385274 89 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CLDN9O95484 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CLDN9O95484 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 SMC4P1-201ENST00000414479 527 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 NIFKP3-201ENST00000417799 865 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 RNF10P1-201ENST00000418589 369 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.53□□□□□ -1.52
CLDN9O95484 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.53□□□□□ -1.52
CLDN9O95484 AC135999.1-201ENST00000478962 479 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 RN7SL570P-201ENST00000484405 292 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.53□□□□□ -1.52
CLDN9O95484 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 HMGN2P36-201ENST00000529541 409 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 AP000619.2-201ENST00000546014 969 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 AC139697.1-201ENST00000548429 745 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.53□□□□□ -1.52
CLDN9O95484 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.53□□□□□ -1.52
CLDN9O95484 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.53□□□□□ -1.52
CLDN9O95484 MIR7109-201ENST00000613748 65 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 AC090607.5-201ENST00000615692 224 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 AP000550.3-201ENST00000637734 379 ntBASIC5.53□□□□□ -1.52
CLDN9O95484 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.53□□□□□ -1.52
CLDN9O95484 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CLDN9O95484 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.53□□□□□ -1.52
CLDN9O95484 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CLDN9O95484 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.53□□□□□ -1.52
CLDN9O95484 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 AC027279.4-201ENST00000624371 2072 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 AC087516.1-201ENST00000561236 2428 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC005261.2-201ENST00000593427 4258 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CLDN9O95484 RNA5SP273-201ENST00000362484 113 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 RNA5SP500-201ENST00000364486 119 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.52□□□□□ -1.53
CLDN9O95484 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
CLDN9O95484 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AK4P4-201ENST00000419465 646 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 SETP9-201ENST00000423837 832 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC5.52□□□□□ -1.53
CLDN9O95484 AC069154.1-201ENST00000432914 542 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC138761.5-201ENST00000433967 325 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC099670.2-201ENST00000435130 321 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 NDUFS5P5-201ENST00000437256 321 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 RPS23P9-201ENST00000448848 438 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 SNORD125-201ENST00000459538 96 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.52□□□□□ -1.53
CLDN9O95484 AC093815.1-201ENST00000508637 280 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.52□□□□□ -1.53
CLDN9O95484 OR5H7P-201ENST00000514084 930 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.52□□□□□ -1.53
CLDN9O95484 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.52□□□□□ -1.53
CLDN9O95484 IGLV3-30-201ENST00000524362 298 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC027369.2-201ENST00000528030 440 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.52□□□□□ -1.53
CLDN9O95484 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.52□□□□□ -1.53
CLDN9O95484 AGGF1P7-201ENST00000562369 913 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 LINC00556-201ENST00000569603 412 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 DHFRP1-201ENST00000579682 559 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC134669.1-201ENST00000581275 672 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
CLDN9O95484 AC024884.1-201ENST00000620583 399 ntBASIC5.52□□□□□ -1.53
CLDN9O95484 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.52□□□□□ -1.53
CLDN9O95484 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.52□□□□□ -1.53
CLDN9O95484 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
CLDN9O95484 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.52□□□□□ -1.53
CLDN9O95484 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CLDN9O95484 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms