Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC090589.1-201ENST00000473109 362 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 DEFB109A-201ENST00000482450 265 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 RPL12P30-201ENST00000488389 499 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 CCDC11P1-201ENST00000503137 1162 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 GLRX-203ENST00000505427 632 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 GUSBP9-201ENST00000510138 584 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC010374.2-201ENST00000512933 535 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC244502.2-201ENST00000543361 851 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 NPM1P42-201ENST00000560329 862 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AP005136.2-201ENST00000583253 1049 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 BNIP3P40-201ENST00000596017 556 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC040174.2-201ENST00000602701 465 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC009032.1-201ENST00000617574 431 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 RNF19BPY-201ENST00000458209 1550 ntBASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.58□□□□□ -1.52
CLIP4Q8N3C7 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 RNA5SP156-201ENST00000410250 110 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 RNA5SP198-201ENST00000410376 127 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 DPPA2P2-201ENST00000418220 897 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 RPL7AP51-201ENST00000422016 760 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 BX276092.6-201ENST00000430476 250 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AL356121.1-201ENST00000442911 156 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 ZNF619P1-201ENST00000446539 752 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AL356390.1-201ENST00000455684 397 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 BX276092.8-201ENST00000455722 250 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC093719.1-201ENST00000480427 441 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC012123.2-201ENST00000485809 248 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC112184.1-201ENST00000505179 312 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AL049779.3-201ENST00000557141 606 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC012414.2-201ENST00000559474 187 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 NPM1P45-201ENST00000583151 559 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 MIR4760-201ENST00000585040 80 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AC119403.2-201ENST00000590960 598 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 RPL12P48-201ENST00000605620 304 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 AL391834.1-201ENST00000609609 560 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 MAPK10-350ENST00000641777 965 ntBASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.57□□□□□ -1.52
CLIP4Q8N3C7 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms