Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC7.48□□□□□ -1.21
HOXC9P31274 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
HOXC9P31274 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
HOXC9P31274 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.47□□□□□ -1.21
HOXC9P31274 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 AC079753.1-201ENST00000623243 3868 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 AC073429.2-201ENST00000569694 1444 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
HOXC9P31274 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
HOXC9P31274 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 SNORA70H-201ENST00000383910 135 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 SNORA70J-201ENST00000384182 135 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 RNA5SP339-201ENST00000390987 122 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 AC006455.6-201ENST00000426192 893 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC7.47□□□□□ -1.21
HOXC9P31274 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC7.47□□□□□ -1.21
HOXC9P31274 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC7.47□□□□□ -1.21
HOXC9P31274 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC7.47□□□□□ -1.21
HOXC9P31274 MIR4700-201ENST00000578311 74 ntBASIC7.47□□□□□ -1.21
HOXC9P31274 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC7.47□□□□□ -1.21
HOXC9P31274 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
HOXC9P31274 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
HOXC9P31274 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC7.47□□□□□ -1.21
HOXC9P31274 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.47□□□□□ -1.21
HOXC9P31274 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.46□□□□□ -1.21
HOXC9P31274 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
HOXC9P31274 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC7.46□□□□□ -1.21
HOXC9P31274 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
HOXC9P31274 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
HOXC9P31274 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
HOXC9P31274 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
HOXC9P31274 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC7.46□□□□□ -1.22
HOXC9P31274 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 AC007938.2-201ENST00000604666 2634 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 AC005294.1-201ENST00000355509 281 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 MIR133B-201ENST00000362210 119 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 RN7SKP6-201ENST00000364795 319 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 SNORA16A-201ENST00000384342 137 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC7.46□□□□□ -1.22
HOXC9P31274 AL133325.1-201ENST00000421090 382 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.46□□□□□ -1.22
HOXC9P31274 AC079080.1-201ENST00000479841 822 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 AC004453.1-201ENST00000487895 408 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC7.46□□□□□ -1.22
HOXC9P31274 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.46□□□□□ -1.22
HOXC9P31274 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.46□□□□□ -1.22
HOXC9P31274 HMGN2P6-201ENST00000551091 273 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC7.46□□□□□ -1.22
HOXC9P31274 OR11J2P-201ENST00000555298 907 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC7.46□□□□□ -1.22
HOXC9P31274 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
HOXC9P31274 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC7.46□□□□□ -1.22
HOXC9P31274 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC7.46□□□□□ -1.22
HOXC9P31274 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
HOXC9P31274 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
HOXC9P31274 AC007114.2-201ENST00000576014 4281 ntBASIC7.46□□□□□ -1.22
HOXC9P31274 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC7.46□□□□□ -1.22
HOXC9P31274 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.46□□□□□ -1.22
HOXC9P31274 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 AL021877.2-201ENST00000624442 10684 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
HOXC9P31274 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC7.45□□□□□ -1.22
HOXC9P31274 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC7.45□□□□□ -1.22
HOXC9P31274 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
HOXC9P31274 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.45□□□□□ -1.22
HOXC9P31274 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
HOXC9P31274 MIR551A-201ENST00000385042 96 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 PRUNEP1-201ENST00000425846 705 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 VN1R21P-201ENST00000426703 765 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 AC092106.1-201ENST00000444291 373 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.45□□□□□ -1.22
HOXC9P31274 AC114982.2-201ENST00000461396 358 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 SLC25A51P1-201ENST00000468432 871 ntBASIC7.45□□□□□ -1.22
HOXC9P31274 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC7.45□□□□□ -1.22
HOXC9P31274 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms