Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC023389.2-201ENST00000580031 955 ntBASIC5.88□□□□□ -1.47
MSH3P20585 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.88□□□□□ -1.47
MSH3P20585 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.88□□□□□ -1.47
MSH3P20585 MIR6809-201ENST00000612189 116 ntBASIC5.88□□□□□ -1.47
MSH3P20585 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH3P20585 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.88□□□□□ -1.47
MSH3P20585 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH3P20585 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH3P20585 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.88□□□□□ -1.47
MSH3P20585 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSH3P20585 PARP4P2-201ENST00000446672 3326 ntBASIC5.87□□□□□ -1.47
MSH3P20585 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
MSH3P20585 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 AC239868.2-201ENST00000564237 4527 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 AC140134.1-201ENST00000511830 3544 ntBASIC5.87□□□□□ -1.47
MSH3P20585 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 RN7SKP128-201ENST00000364270 303 ntBASIC5.87□□□□□ -1.47
MSH3P20585 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 AC016739.1-201ENST00000405359 345 ntBASIC5.87□□□□□ -1.47
MSH3P20585 CASKP1-201ENST00000412870 582 ntBASIC5.87□□□□□ -1.47
MSH3P20585 RPS4XP5-201ENST00000419038 768 ntBASIC5.87□□□□□ -1.47
MSH3P20585 KIF4CP-201ENST00000422742 1279 ntBASIC5.87□□□□□ -1.47
MSH3P20585 OR5W1P-201ENST00000423705 938 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AL590399.2-201ENST00000427536 309 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH3P20585 SUMO2P8-201ENST00000434672 286 ntBASIC5.87□□□□□ -1.47
MSH3P20585 RPS3AP38-201ENST00000435889 763 ntBASIC5.87□□□□□ -1.47
MSH3P20585 KRT8P51-201ENST00000438938 274 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AL138899.2-201ENST00000439139 499 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AL663074.2-201ENST00000440621 479 ntBASIC5.87□□□□□ -1.47
MSH3P20585 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 RPL5P10-201ENST00000445207 894 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 AL603882.1-201ENST00000463059 681 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AC093719.1-201ENST00000480427 441 ntBASIC5.87□□□□□ -1.47
MSH3P20585 RN7SL193P-201ENST00000491708 276 ntBASIC5.87□□□□□ -1.47
MSH3P20585 OR52A4P-203ENST00000498233 1014 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH3P20585 OR5H7P-201ENST00000514084 930 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.87□□□□□ -1.47
MSH3P20585 snoU109.5-201ENST00000516231 132 ntBASIC5.87□□□□□ -1.47
MSH3P20585 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH3P20585 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 AC005363.1-201ENST00000530779 351 ntBASIC5.87□□□□□ -1.47
MSH3P20585 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 LINC00556-201ENST00000569603 412 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.87□□□□□ -1.47
MSH3P20585 AC010615.3-201ENST00000597319 394 ntBASIC5.87□□□□□ -1.47
MSH3P20585 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.87□□□□□ -1.47
MSH3P20585 AC067773.1-201ENST00000603284 1094 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.87□□□□□ -1.47
MSH3P20585 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.87□□□□□ -1.47
MSH3P20585 AL445670.1-201ENST00000618889 801 ntBASIC5.87□□□□□ -1.47
MSH3P20585 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 MIPEPP2-201ENST00000422560 1819 ntBASIC5.87□□□□□ -1.47
MSH3P20585 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.87□□□□□ -1.47
MSH3P20585 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
MSH3P20585 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
MSH3P20585 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 AC087516.1-201ENST00000561236 2428 ntBASIC5.86□□□□□ -1.47
MSH3P20585 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
MSH3P20585 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
MSH3P20585 AC027088.4-201ENST00000611559 1947 ntBASIC5.86□□□□□ -1.47
MSH3P20585 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSH3P20585 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.86□□□□□ -1.47
MSH3P20585 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.86□□□□□ -1.47
MSH3P20585 KYNUP3-201ENST00000574386 1341 ntBASIC5.86□□□□□ -1.47
MSH3P20585 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 SUGT1P2-201ENST00000379452 992 ntBASIC5.86□□□□□ -1.47
MSH3P20585 RNU11-201ENST00000387069 134 ntBASIC5.86□□□□□ -1.47
MSH3P20585 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
MSH3P20585 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSH3P20585 AL096711.1-201ENST00000404780 554 ntBASIC5.86□□□□□ -1.47
MSH3P20585 RN7SKP17-201ENST00000411242 351 ntBASIC5.86□□□□□ -1.47
MSH3P20585 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.86□□□□□ -1.47
MSH3P20585 AC006455.6-201ENST00000426192 893 ntBASIC5.86□□□□□ -1.47
MSH3P20585 USP24P1-201ENST00000433802 779 ntBASIC5.86□□□□□ -1.47
MSH3P20585 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
MSH3P20585 REG1CP-206ENST00000447469 496 ntBASIC5.86□□□□□ -1.47
MSH3P20585 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms