Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPL6P30-201ENST00000443382 862 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC068522.1-201ENST00000482895 345 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AC117395.1-201ENST00000487390 403 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC6.56□□□□□ -1.36
USP39Q53GS9 NAMPTP2-201ENST00000505629 1115 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 SCARNA5-201ENST00000516201 276 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.56□□□□□ -1.36
USP39Q53GS9 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.56□□□□□ -1.36
USP39Q53GS9 EMP1-206ENST00000537612 505 ntTSL 3 BASIC6.56□□□□□ -1.36
USP39Q53GS9 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC245036.5-201ENST00000596330 847 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AC027334.1-201ENST00000603257 310 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 RPSAP75-201ENST00000605848 301 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AC092954.1-201ENST00000609121 445 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AP000894.4-201ENST00000610185 483 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC005899.7-201ENST00000618199 588 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AC084824.4-201ENST00000620106 731 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AP003497.2-201ENST00000624220 967 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 AL161901.1-201ENST00000624954 3425 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC007406.5-201ENST00000570140 3170 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 AC005034.3-201ENST00000604845 1747 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6.56□□□□□ -1.36
USP39Q53GS9 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
USP39Q53GS9 RACGAP1P-201ENST00000550663 1879 ntBASIC6.56□□□□□ -1.36
USP39Q53GS9 LYARP1-201ENST00000436977 1501 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.55□□□□□ -1.36
USP39Q53GS9 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.55□□□□□ -1.36
USP39Q53GS9 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC023490.2-201ENST00000359859 470 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC016907.1-201ENST00000419483 435 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 RCC2P2-201ENST00000422174 918 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 KCTD10P1-201ENST00000434203 625 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC069540.1-201ENST00000446320 988 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 MTND1P27-201ENST00000451117 902 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC104982.1-201ENST00000478775 574 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC087672.1-201ENST00000479876 766 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC093827.1-201ENST00000480094 861 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 RN7SL561P-201ENST00000488553 281 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 MTCO2P9-201ENST00000503214 694 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 Y_RNA.688-201ENST00000516565 95 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC021733.2-201ENST00000518830 497 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC6.55□□□□□ -1.36
USP39Q53GS9 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL133399.1-201ENST00000527476 298 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 OR4A13P-201ENST00000529316 942 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 OSBPL9P5-201ENST00000542581 171 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 MTCYBP33-201ENST00000575007 1130 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC012146.2-201ENST00000576545 416 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC007448.1-201ENST00000582714 234 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.55□□□□□ -1.36
USP39Q53GS9 GLYATL1P2-202ENST00000588046 902 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AC020915.5-201ENST00000596836 964 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC069431.2-201ENST00000604149 1099 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC005252.1-201ENST00000604518 1063 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AC108865.2-201ENST00000606881 432 ntBASIC6.55□□□□□ -1.36
USP39Q53GS9 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.55□□□□□ -1.36
USP39Q53GS9 AL121594.5-201ENST00000631724 573 ntBASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms