Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
CCDC42Q96M95 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC42Q96M95 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC008627.1-201ENST00000517511 1704 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 OR7E116P-201ENST00000448529 957 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 GLYAT-203ENST00000529732 1070 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC137627.1-201ENST00000545761 289 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 MT1CP-201ENST00000567054 174 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC004232.2-201ENST00000574245 821 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC068768.2-201ENST00000602352 343 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC007786.3-201ENST00000615154 596 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 MIR6823-201ENST00000622118 61 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 AC104964.3-201ENST00000606115 2860 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 AP001284.1-201ENST00000528393 2118 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC42Q96M95 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC42Q96M95 PSG10P-201ENST00000501199 1500 ntBASIC6.2□□□□□ -1.42
CCDC42Q96M95 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC016739.1-201ENST00000405359 345 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC064862.5-201ENST00000440618 334 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 MED28P3-201ENST00000444288 531 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 SNORD125-201ENST00000459538 96 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC012123.2-201ENST00000485809 248 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 RNA5SP441-201ENST00000516809 88 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC091078.2-201ENST00000557145 559 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AL078601.3-201ENST00000573303 535 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.19□□□□□ -1.42
CCDC42Q96M95 AP005119.1-201ENST00000580956 292 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 AL357140.4-201ENST00000636827 412 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 GVINP1-202ENST00000531871 7271 ntBASIC6.19□□□□□ -1.42
CCDC42Q96M95 TMEM267-201ENST00000397080 2338 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CCDC42Q96M95 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CCDC42Q96M95 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
CCDC42Q96M95 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms