Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC5.6□□□□□ -1.51
SOX3P41225 TRIM60P16-201ENST00000444048 694 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.6□□□□□ -1.51
SOX3P41225 AC094085.1-201ENST00000468914 584 ntBASIC5.6□□□□□ -1.51
SOX3P41225 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.6□□□□□ -1.51
SOX3P41225 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.6□□□□□ -1.51
SOX3P41225 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.6□□□□□ -1.51
SOX3P41225 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.6□□□□□ -1.51
SOX3P41225 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SOX3P41225 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.6□□□□□ -1.51
SOX3P41225 TRIM77BP-201ENST00000524985 1119 ntBASIC5.6□□□□□ -1.51
SOX3P41225 OR6M2P-201ENST00000529831 871 ntBASIC5.6□□□□□ -1.51
SOX3P41225 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.6□□□□□ -1.51
SOX3P41225 NPM1P42-201ENST00000560329 862 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.6□□□□□ -1.51
SOX3P41225 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.6□□□□□ -1.51
SOX3P41225 AP005119.1-201ENST00000580956 292 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.6□□□□□ -1.51
SOX3P41225 AP001357.1-201ENST00000586304 1053 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.6□□□□□ -1.51
SOX3P41225 AC004890.3-201ENST00000605566 1095 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC5.6□□□□□ -1.51
SOX3P41225 AL365181.4-201ENST00000609800 547 ntBASIC5.6□□□□□ -1.51
SOX3P41225 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.6□□□□□ -1.51
SOX3P41225 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.6□□□□□ -1.51
SOX3P41225 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
SOX3P41225 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SOX3P41225 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SOX3P41225 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SOX3P41225 AC138907.8-201ENST00000623981 2256 ntBASIC5.6□□□□□ -1.51
SOX3P41225 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SOX3P41225 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.6□□□□□ -1.51
SOX3P41225 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SOX3P41225 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
SOX3P41225 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SOX3P41225 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.59□□□□□ -1.51
SOX3P41225 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
SOX3P41225 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SOX3P41225 RNU105B-201ENST00000364478 208 ntBASIC5.59□□□□□ -1.51
SOX3P41225 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
SOX3P41225 RN7SKP17-201ENST00000411242 351 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.59□□□□□ -1.51
SOX3P41225 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 AC079807.1-201ENST00000429993 481 ntBASIC5.59□□□□□ -1.51
SOX3P41225 USP24P1-201ENST00000433802 779 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 AC009963.4-201ENST00000448535 339 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC005077.1-201ENST00000449226 375 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC016027.4-201ENST00000450866 277 ntBASIC5.59□□□□□ -1.51
SOX3P41225 CFL1P4-201ENST00000451536 498 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC144530.1-201ENST00000452862 555 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.59□□□□□ -1.51
SOX3P41225 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 OR5H7P-201ENST00000514084 930 ntBASIC5.59□□□□□ -1.51
SOX3P41225 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.59□□□□□ -1.51
SOX3P41225 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.59□□□□□ -1.51
SOX3P41225 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
SOX3P41225 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.59□□□□□ -1.51
SOX3P41225 AC010615.3-201ENST00000597319 394 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC108673.3-201ENST00000609183 335 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AC096861.1-201ENST00000616652 240 ntBASIC5.59□□□□□ -1.51
SOX3P41225 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
SOX3P41225 TET1P1-201ENST00000426627 2301 ntBASIC5.59□□□□□ -1.51
SOX3P41225 AL049634.1-201ENST00000453770 1720 ntBASIC5.59□□□□□ -1.51
SOX3P41225 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
SOX3P41225 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.58□□□□□ -1.52
SOX3P41225 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
SOX3P41225 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.58□□□□□ -1.52
SOX3P41225 AC233968.1-201ENST00000611212 1300 ntBASIC5.58□□□□□ -1.52
SOX3P41225 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
SOX3P41225 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms