Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC3.96□□□□□ -1.77
PRKDCP78527 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 RBPJP2-201ENST00000618187 1444 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 KIAA0319-202ENST00000430948 6620 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
PRKDCP78527 NLRC5-203ENST00000436936 6724 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 AC068522.1-201ENST00000482895 345 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 AC021678.3-201ENST00000517893 476 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC020765.1-201ENST00000604296 328 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC024941.1-201ENST00000612250 334 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC112200.1-201ENST00000625015 234 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
PRKDCP78527 TIAM2-202ENST00000318981 5916 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 CELF2-204ENST00000417956 8044 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 ICA1L-202ENST00000392237 5173 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 AC006206.1-201ENST00000544842 3387 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC096775.1-201ENST00000437724 448 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC3.96□□□□□ -1.78
PRKDCP78527 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC3.96□□□□□ -1.78
PRKDCP78527 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC3.96□□□□□ -1.78
PRKDCP78527 AC068831.4-201ENST00000556118 109 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 MIR4260-201ENST00000583107 67 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
PRKDCP78527 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 KCNK10-203ENST00000340700 7501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 ACVR2B-201ENST00000352511 11821 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 AC232271.1-201ENST00000602455 2715 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 SIPA1L2-203ENST00000366630 6690 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 PWAR1-201ENST00000624188 2414 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 TNPO1P2-201ENST00000426249 2665 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 THAP12P4-201ENST00000528321 2266 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 SNORA71.3-201ENST00000362582 128 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC3.96□□□□□ -1.78
PRKDCP78527 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 RBMY2TP-201ENST00000451162 947 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.96□□□□□ -1.78
PRKDCP78527 AC244502.2-201ENST00000543361 851 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 DPPA3P2-202ENST00000557188 1219 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC3.96□□□□□ -1.78
PRKDCP78527 AC060766.1-201ENST00000590824 627 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 AC012254.5-201ENST00000623573 478 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC027348.2-201ENST00000624375 642 ntBASIC3.96□□□□□ -1.78
PRKDCP78527 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC3.96□□□□□ -1.78
PRKDCP78527 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 CACNA1E-201ENST00000357570 7064 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
PRKDCP78527 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PRKDCP78527 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
PRKDCP78527 CCDC93-201ENST00000319432 6896 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 CCDC93-202ENST00000376300 6899 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC3.95□□□□□ -1.78
PRKDCP78527 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 EFHC1-201ENST00000371068 6987 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 EMP1-201ENST00000256951 5921 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 RNU2-50P-201ENST00000410494 143 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 RPL23AP83-201ENST00000434984 473 ntBASIC3.95□□□□□ -1.78
PRKDCP78527 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC3.95□□□□□ -1.78
PRKDCP78527 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC3.95□□□□□ -1.78
PRKDCP78527 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC3.95□□□□□ -1.78
PRKDCP78527 SLC24A4-201ENST00000393265 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PRKDCP78527 NUP210L-203ENST00000368559 5889 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms