Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 OLMALINC-203ENST00000641087 3779 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 RN7SKP292-201ENST00000365522 317 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC240504.1-201ENST00000395709 845 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AL096829.1-201ENST00000413677 457 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 RPL36P18-201ENST00000419316 318 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 BX284632.2-201ENST00000421091 399 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC245884.2-201ENST00000426257 404 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 VN1R110P-201ENST00000438988 971 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AL512605.1-202ENST00000441919 381 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC009237.1-201ENST00000442127 744 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AL359955.2-201ENST00000445380 353 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 RPL36AP39-201ENST00000445859 318 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 HMGN1P36-201ENST00000446623 298 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AL731661.2-201ENST00000448824 806 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AP000926.3-201ENST00000497201 299 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 RNU6-964P-201ENST00000516524 69 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 LINC00871-204ENST00000556886 866 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 ZNF322P1-201ENST00000568013 1209 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC027229.1-201ENST00000583887 253 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC022726.2-201ENST00000634673 547 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 OR7A1P-202ENST00000641542 1158 ntBASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC3Q9BQI4 AC139426.3-201ENST00000605648 2059 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 LINC01616-201ENST00000561816 2280 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 CCDC129-211ENST00000615280 4142 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC137056.2-201ENST00000624055 1958 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 SNORD8-201ENST00000363915 110 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 RNA5SP242-201ENST00000364171 118 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AL096711.1-201ENST00000404780 554 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 RN7SKP161-201ENST00000411110 305 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AL353626.3-201ENST00000413399 657 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AL354890.1-201ENST00000413730 346 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 BX323845.3-201ENST00000428215 527 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 GAPDHP75-201ENST00000433910 943 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AL445466.1-201ENST00000448432 357 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC103563.5-201ENST00000455643 364 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 OR7L1P-201ENST00000456181 380 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC074386.1-201ENST00000476560 767 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 RN7SL717P-201ENST00000478343 297 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 FTH1P8-201ENST00000498161 514 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC112191.2-201ENST00000522428 333 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC135626.1-201ENST00000556983 435 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC010615.3-201ENST00000597319 394 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC009237.12-201ENST00000604755 742 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AP005431.1-201ENST00000618479 319 ntBASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC3Q9BQI4 CCNT2P1-201ENST00000423082 1315 ntBASIC5.9□□□□□ -1.47
CCDC3Q9BQI4 AL117378.2-201ENST00000622916 1337 ntBASIC5.9□□□□□ -1.47
CCDC3Q9BQI4 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.9□□□□□ -1.47
CCDC3Q9BQI4 AC024587.1-201ENST00000505925 2157 ntBASIC5.9□□□□□ -1.47
CCDC3Q9BQI4 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
CCDC3Q9BQI4 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC5.9□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms