Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LDLRP01130 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.95□□□□□ -1.46
LDLRP01130 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LDLRP01130 CCNT2P1-201ENST00000423082 1315 ntBASIC5.95□□□□□ -1.46
LDLRP01130 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.95□□□□□ -1.46
LDLRP01130 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.94□□□□□ -1.46
LDLRP01130 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.94□□□□□ -1.46
LDLRP01130 AC114876.1-201ENST00000490962 1366 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 AL121768.1-201ENST00000613917 2544 ntBASIC5.94□□□□□ -1.46
LDLRP01130 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 SMG1P5-202ENST00000529428 4219 ntBASIC5.94□□□□□ -1.46
LDLRP01130 SMG1P2-201ENST00000566127 4221 ntBASIC5.94□□□□□ -1.46
LDLRP01130 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 COX6B1P3-201ENST00000312310 260 ntBASIC5.94□□□□□ -1.46
LDLRP01130 SNORA17A-201ENST00000391185 133 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AL031985.1-201ENST00000392713 418 ntBASIC5.94□□□□□ -1.46
LDLRP01130 RPL5P20-201ENST00000403848 896 ntBASIC5.94□□□□□ -1.46
LDLRP01130 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
LDLRP01130 RPS3P2-201ENST00000421346 701 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
LDLRP01130 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.94□□□□□ -1.46
LDLRP01130 AL354707.3-201ENST00000427308 331 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.94□□□□□ -1.46
LDLRP01130 RPL24-206ENST00000495401 478 ntTSL 2 BASIC5.94□□□□□ -1.46
LDLRP01130 AC131392.1-201ENST00000506490 633 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 ZNF519P4-201ENST00000514008 125 ntBASIC5.94□□□□□ -1.46
LDLRP01130 RNA5SP400-201ENST00000517155 111 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.94□□□□□ -1.46
LDLRP01130 TRIM77BP-201ENST00000524985 1119 ntBASIC5.94□□□□□ -1.46
LDLRP01130 CYCSP25-201ENST00000525280 316 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC110056.1-201ENST00000525759 911 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC5.94□□□□□ -1.46
LDLRP01130 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.94□□□□□ -1.46
LDLRP01130 RPL3P13-201ENST00000550415 216 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.94□□□□□ -1.46
LDLRP01130 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.94□□□□□ -1.46
LDLRP01130 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 AC027334.1-201ENST00000603257 310 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AC138473.1-201ENST00000605717 526 ntBASIC5.94□□□□□ -1.46
LDLRP01130 SNORD96A-201ENST00000606577 79 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.94□□□□□ -1.46
LDLRP01130 AC093635.1-201ENST00000609028 555 ntBASIC5.94□□□□□ -1.46
LDLRP01130 MIR6768-201ENST00000610734 72 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AL118556.2-201ENST00000614375 824 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AL391597.1-201ENST00000618707 694 ntBASIC5.94□□□□□ -1.46
LDLRP01130 AP001002.2-201ENST00000625137 386 ntBASIC5.94□□□□□ -1.46
LDLRP01130 SNORA17.5-201ENST00000630429 132 ntBASIC5.94□□□□□ -1.46
LDLRP01130 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.94□□□□□ -1.46
LDLRP01130 SAGE3P-201ENST00000619800 1635 ntBASIC5.94□□□□□ -1.46
LDLRP01130 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.94□□□□□ -1.46
LDLRP01130 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC5.94□□□□□ -1.46
LDLRP01130 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LDLRP01130 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
LDLRP01130 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
LDLRP01130 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.93□□□□□ -1.46
LDLRP01130 AC096921.2-201ENST00000561507 1916 ntBASIC5.93□□□□□ -1.46
LDLRP01130 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LDLRP01130 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LDLRP01130 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LDLRP01130 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LDLRP01130 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
LDLRP01130 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
LDLRP01130 AC023490.2-201ENST00000359859 470 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AC003045.1-201ENST00000398779 713 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AL121977.1-201ENST00000401636 979 ntBASIC5.93□□□□□ -1.46
LDLRP01130 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.93□□□□□ -1.46
LDLRP01130 AL590399.2-201ENST00000427536 309 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LDLRP01130 GTF3AP6-201ENST00000432585 986 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AL365220.1-201ENST00000432923 399 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 AC068228.1-201ENST00000461723 211 ntBASIC5.93□□□□□ -1.46
LDLRP01130 RPL5P14-201ENST00000494197 878 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.93□□□□□ -1.46
LDLRP01130 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.93□□□□□ -1.46
LDLRP01130 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 AC051619.2-201ENST00000559063 397 ntBASIC5.93□□□□□ -1.46
LDLRP01130 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.93□□□□□ -1.46
LDLRP01130 MIR4433B-201ENST00000581329 102 ntBASIC5.93□□□□□ -1.46
LDLRP01130 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LDLRP01130 AC245052.7-201ENST00000601161 359 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AL133406.3-201ENST00000606817 541 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AL008723.3-201ENST00000608926 449 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.93□□□□□ -1.46
LDLRP01130 AC073488.9-201ENST00000631601 754 ntBASIC5.93□□□□□ -1.46
LDLRP01130 AC103703.1-201ENST00000634783 663 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms