Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nkx2-4Q9EQM3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Nkx2-4Q9EQM3 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Nkx2-4Q9EQM3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Gm29707-201ENSMUST00000196325 491 ntBASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Nkx2-4Q9EQM3 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Gm10576-201ENSMUST00000191927 825 ntBASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Gm18421-201ENSMUST00000204122 625 ntBASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.36■□□□□ 0.37
Nkx2-4Q9EQM3 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Gm14822-201ENSMUST00000122247 291 ntBASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Gm27397-201ENSMUST00000184997 107 ntBASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Gm44450-201ENSMUST00000199528 114 ntBASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Nkx2-4Q9EQM3 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Gm24513-201ENSMUST00000174964 138 ntBASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Nkx2-4Q9EQM3 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms