Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Gm27000-201ENSMUST00000182943 842 ntBASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Gm27463-201ENSMUST00000183569 57 ntBASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Ddx56Q9D0R4 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Ddx56Q9D0R4 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Gm18958-201ENSMUST00000174258 762 ntBASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Gm5417-201ENSMUST00000079706 384 ntBASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Ddx56Q9D0R4 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Ddx56Q9D0R4 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Gm43353-201ENSMUST00000199224 1295 ntBASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Ddx56Q9D0R4 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Gm37055-201ENSMUST00000191866 133 ntBASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.77■□□□□ 0.44
Ddx56Q9D0R4 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms