Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC20■□□□□ 0.79
Trim56Q80VI1 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20■□□□□ 0.79
Trim56Q80VI1 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.99■□□□□ 0.79
Trim56Q80VI1 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim56Q80VI1 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
Trim56Q80VI1 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.98■□□□□ 0.79
Trim56Q80VI1 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.98■□□□□ 0.79
Trim56Q80VI1 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim56Q80VI1 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim56Q80VI1 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.95■□□□□ 0.78
Trim56Q80VI1 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.95■□□□□ 0.78
Trim56Q80VI1 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim56Q80VI1 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms