Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Cdx1P18111 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Cdx1P18111 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC13.7□□□□□ -0.22
Cdx1P18111 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdx1P18111 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Cdx1P18111 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cdx1P18111 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cdx1P18111 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdx1P18111 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdx1P18111 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cdx1P18111 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cdx1P18111 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdx1P18111 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdx1P18111 Gm45212-201ENSMUST00000205831 3403 ntBASIC13.68□□□□□ -0.22
Cdx1P18111 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdx1P18111 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Cdx1P18111 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC13.68□□□□□ -0.22
Cdx1P18111 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC13.68□□□□□ -0.22
Cdx1P18111 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC13.68□□□□□ -0.22
Cdx1P18111 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC13.68□□□□□ -0.22
Cdx1P18111 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC13.68□□□□□ -0.22
Cdx1P18111 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Cdx1P18111 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
Cdx1P18111 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdx1P18111 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Cdx1P18111 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Cdx1P18111 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Gm7860-201ENSMUST00000121190 879 ntBASIC13.67□□□□□ -0.22
Cdx1P18111 Gm13168-201ENSMUST00000121771 632 ntBASIC13.67□□□□□ -0.22
Cdx1P18111 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdx1P18111 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Cdx1P18111 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdx1P18111 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms