Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC020916.2-201ENST00000591242 360 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL080312.2-201ENST00000613001 630 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC073488.6-201ENST00000632293 754 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC111152.1-202ENST00000635848 339 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 AL078595.2-201ENST00000605309 1780 ntBASIC5.41□□□□□ -1.54
SKA3Q8IX90 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
SKA3Q8IX90 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.41□□□□□ -1.54
SKA3Q8IX90 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 OR3D1P-201ENST00000438288 955 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC112187.1-201ENST00000455837 479 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC090958.1-201ENST00000511122 351 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 RN7SKP183-201ENST00000517169 324 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 OR6M2P-201ENST00000529831 871 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 TXNP4-201ENST00000575018 310 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 RNU4ATAC-201ENST00000580972 127 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 AC008555.7-201ENST00000605008 583 ntBASIC5.4□□□□□ -1.54
SKA3Q8IX90 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.4□□□□□ -1.54
SKA3Q8IX90 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SKA3Q8IX90 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
SKA3Q8IX90 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC004158.1-201ENST00000564508 4319 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 RNA5SP375-201ENST00000362975 119 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 RNA5SP232-201ENST00000364144 119 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 RBBP4P5-201ENST00000398583 1266 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 NPM1P38-201ENST00000403835 865 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.39□□□□□ -1.55
SKA3Q8IX90 DEFB109A-201ENST00000482450 265 ntBASIC5.39□□□□□ -1.55
SKA3Q8IX90 AC021006.1-201ENST00000489849 553 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms