Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC096754.1-201ENST00000508904 818 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC6.66□□□□□ -1.34
USP39Q53GS9 C1DP5-201ENST00000525775 383 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.66□□□□□ -1.34
USP39Q53GS9 REXO2-218ENST00000544827 880 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 AC012414.2-201ENST00000559474 187 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC6.66□□□□□ -1.34
USP39Q53GS9 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC6.66□□□□□ -1.34
USP39Q53GS9 Z94722.1-201ENST00000604328 474 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 MIR6862-1-201ENST00000613016 70 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 MIR6862-2-201ENST00000614755 70 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AP003789.1-201ENST00000617737 605 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.66□□□□□ -1.34
USP39Q53GS9 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.66□□□□□ -1.34
USP39Q53GS9 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.66□□□□□ -1.34
USP39Q53GS9 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 DDX43P2-201ENST00000604753 1354 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 TATDN2P3-201ENST00000452855 3665 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AC062029.1-202ENST00000606164 3651 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.66□□□□□ -1.34
USP39Q53GS9 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
USP39Q53GS9 AC120338.1-201ENST00000625074 1541 ntBASIC6.66□□□□□ -1.34
USP39Q53GS9 AC083806.2-201ENST00000617795 2685 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.65□□□□□ -1.34
USP39Q53GS9 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC105114.1-201ENST00000624795 1862 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
USP39Q53GS9 SNORA70.3-201ENST00000365075 132 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC005522.1-201ENST00000395416 346 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 NPM1P38-201ENST00000403835 865 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 RN7SKP296-201ENST00000411185 341 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC107081.1-201ENST00000414975 361 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC019205.1-201ENST00000421830 730 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 RPL12P28-201ENST00000430852 489 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 NDUFA5P1-201ENST00000433858 341 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AMYP1-201ENST00000440059 1023 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 SETD6P1-201ENST00000444575 317 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.65□□□□□ -1.34
USP39Q53GS9 COX4I1P2-201ENST00000447446 547 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 RARRES2P3-201ENST00000457739 473 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 SULT1D1P-201ENST00000458020 882 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 SEPT7P6-201ENST00000469999 1143 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 NDUFA5P9-201ENST00000472609 340 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 PRELID3BP6-201ENST00000503839 571 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC021220.1-201ENST00000507445 630 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 SNX18P25-201ENST00000510539 758 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 AC005632.2-201ENST00000564271 828 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 OOSP1P2-201ENST00000579644 351 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AP001160.4-201ENST00000596971 382 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC015726.1-201ENST00000602353 681 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC124916.2-201ENST00000604416 224 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AL163051.2-201ENST00000618976 735 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.65□□□□□ -1.34
USP39Q53GS9 MIR6811-201ENST00000620409 58 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC120057.5-201ENST00000623840 154 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AC007683.2-201ENST00000624681 714 ntBASIC6.65□□□□□ -1.34
USP39Q53GS9 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.65□□□□□ -1.34
USP39Q53GS9 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
USP39Q53GS9 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
USP39Q53GS9 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
USP39Q53GS9 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.65□□□□□ -1.35
USP39Q53GS9 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC6.65□□□□□ -1.35
USP39Q53GS9 CYP2G2P-201ENST00000594920 1485 ntBASIC6.65□□□□□ -1.35
USP39Q53GS9 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
USP39Q53GS9 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.65□□□□□ -1.35
USP39Q53GS9 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
USP39Q53GS9 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.65□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms