Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CYCSP6-201ENST00000434498 302 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 RPS26P41-201ENST00000450370 284 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AL645937.3-201ENST00000453647 936 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AL022319.1-201ENST00000458183 1167 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AL672167.3-201ENST00000465951 960 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 RPL32P33-201ENST00000487023 394 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC114786.1-201ENST00000512892 1415 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 MIR4776-2-201ENST00000580204 80 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 MIR193BHG-214ENST00000641765 509 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC022034.1-201ENST00000512867 2156 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 PARP4P2-201ENST00000446672 3326 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 YES1P1-201ENST00000418510 1628 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 SNRPEP6-201ENST00000407465 277 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 RPL12P3-201ENST00000440080 396 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 SEPT14P12-201ENST00000442280 560 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AL022237.1-201ENST00000446663 358 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 RPL35AP28-201ENST00000459730 331 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC008629.2-201ENST00000503783 483 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AC007204.2-201ENST00000615022 616 ntBASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC88AQ3V6T2 AL157831.2-201ENST00000564681 3095 ntBASIC7.27□□□□□ -1.24
CCDC88AQ3V6T2 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 GON4L-203ENST00000368331 7823 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AC005042.1-201ENST00000393397 800 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AC016739.1-201ENST00000405359 345 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 CBX1P2-201ENST00000453841 458 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AC096754.1-201ENST00000508904 818 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 OR5D15P-201ENST00000531671 942 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 IGBP1P1-201ENST00000554337 1009 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 MIR4436B2-201ENST00000581415 91 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 MIR4436B1-201ENST00000583272 91 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 CYP4Z2P-201ENST00000423332 1512 ntBASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC7.27□□□□□ -1.25
CCDC88AQ3V6T2 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 FRG2FP-204ENST00000453982 852 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 RANP1-206ENST00000455094 651 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC253576.1-201ENST00000511645 1156 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC073342.3-201ENST00000624211 193 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AC007683.2-201ENST00000624681 714 ntBASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC7.26□□□□□ -1.25
CCDC88AQ3V6T2 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms