Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 MSR1-202ENST00000350896 3572 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC3Q9BQI4 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 RNFT1P3-201ENST00000340898 1052 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 RNA5SP284-201ENST00000384547 118 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 CDY17P-201ENST00000414121 1282 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC244033.1-201ENST00000426826 870 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC097721.1-201ENST00000427150 1253 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 MTND6P12-201ENST00000428247 522 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 SEPT14P12-201ENST00000442280 560 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 RANP2-201ENST00000456833 229 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC068522.1-201ENST00000482895 345 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC114781.3-201ENST00000512083 142 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 RNA5SP438-201ENST00000516561 112 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC022784.5-201ENST00000522241 437 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 CETN3-206ENST00000522864 738 ntTSL 3 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 AP005639.1-201ENST00000526939 192 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 MIR4301-201ENST00000577203 66 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC091193.1-201ENST00000604640 448 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC015849.6-201ENST00000605454 474 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC108673.3-201ENST00000609183 335 ntBASIC6□□□□□ -1.45
CCDC3Q9BQI4 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC3Q9BQI4 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6□□□□□ -1.45
CCDC3Q9BQI4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC016251.2-201ENST00000623393 3089 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC024651.2-201ENST00000562480 2098 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 RBMY1HP-201ENST00000382759 1389 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 SNORA51.1-201ENST00000363243 140 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC245096.1-201ENST00000413104 546 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 CHEK2P5-201ENST00000423877 246 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC092967.1-201ENST00000449016 481 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 SNORA81.2-201ENST00000516868 170 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC092121.1-201ENST00000569452 202 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 BX323046.1-201ENST00000610145 535 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 AC127024.6-201ENST00000621598 424 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms