Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SKP108-201ENST00000411367 328 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC002127.1-201ENST00000421305 225 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC239367.3-201ENST00000428996 814 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 Z85994.2-201ENST00000434327 452 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AL645936.1-201ENST00000441979 518 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 RPL36AP39-201ENST00000445859 318 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MTND3P4-201ENST00000453537 303 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC005520.3-201ENST00000602874 370 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC004805.3-201ENST00000603178 310 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC010998.3-201ENST00000613871 631 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC010333.3-201ENST00000615100 402 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC118658.2-201ENST00000618697 459 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 FAM27E2-201ENST00000619668 403 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC079949.2-201ENST00000617117 2933 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AC027575.3-201ENST00000583058 2747 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 OFD1P17-201ENST00000437639 3018 ntBASIC6.17□□□□□ -1.42
COL28A1Q2UY09 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
COL28A1Q2UY09 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AL161901.1-201ENST00000624954 3425 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC110597.1-201ENST00000562669 3176 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 RNU6-819P-201ENST00000364116 107 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 SNORA70.9-201ENST00000384370 135 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AL157884.1-201ENST00000424561 454 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 TRIM60P13-201ENST00000432350 1283 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AL627308.1-201ENST00000435693 821 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 HESX1-202ENST00000473921 757 ntTSL 5 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 CSNK1A1P3-201ENST00000504105 330 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 SNORA70.17-201ENST00000516449 133 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 RNA5SP340-201ENST00000517132 107 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 ODF1-202ENST00000518835 368 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC112191.2-201ENST00000522428 333 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AP003168.1-201ENST00000530091 307 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AL162632.2-201ENST00000553933 399 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC022387.2-201ENST00000604050 448 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AP000864.1-201ENST00000609424 650 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC092681.3-201ENST00000609463 678 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC004801.6-201ENST00000616571 978 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AP005431.1-201ENST00000618479 319 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AP001885.1-201ENST00000621658 558 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 FGG-205ENST00000407946 1636 ntTSL 5 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 MAPK10-261ENST00000641050 3109 ntBASIC6.16□□□□□ -1.42
COL28A1Q2UY09 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.16□□□□□ -1.42
COL28A1Q2UY09 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
COL28A1Q2UY09 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms