Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC007568.1-201ENST00000422912 471 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 AC097463.1-201ENST00000447288 481 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 MGAT2P1-201ENST00000449718 797 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 snoU13.29-201ENST00000459370 104 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AC068228.1-201ENST00000461723 211 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXD4P09016 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 PRMT5P1-201ENST00000514351 598 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 IGKV1OR22-1-201ENST00000521497 360 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXD4P09016 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.71□□□□□ -1.5
HOXD4P09016 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.71□□□□□ -1.5
HOXD4P09016 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.71□□□□□ -1.5
HOXD4P09016 AC012146.2-201ENST00000576545 416 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AC007448.1-201ENST00000582714 234 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 GLYATL1P2-202ENST00000588046 902 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.71□□□□□ -1.5
HOXD4P09016 AP000894.4-201ENST00000610185 483 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 U1.25-201ENST00000614085 162 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 U1.34-201ENST00000618578 162 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 U1.31-201ENST00000620022 160 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AL132640.3-201ENST00000630473 177 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 AC073488.6-201ENST00000632293 754 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HOXD4P09016 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
HOXD4P09016 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC5.71□□□□□ -1.5
HOXD4P09016 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXD4P09016 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.71□□□□□ -1.5
HOXD4P09016 AP001284.1-201ENST00000528393 2118 ntBASIC5.71□□□□□ -1.5
HOXD4P09016 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HOXD4P09016 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HOXD4P09016 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HOXD4P09016 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 AL445224.1-201ENST00000420595 737 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 AL139415.1-201ENST00000424862 352 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXD4P09016 PNKDP1-201ENST00000435914 430 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXD4P09016 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXD4P09016 AC084754.1-201ENST00000463466 464 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 RN7SL714P-201ENST00000487050 298 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXD4P09016 RPL12P30-201ENST00000488389 499 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 HMGB3P14-201ENST00000494195 599 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AC090058.1-201ENST00000498788 435 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 RBBP4P1-201ENST00000502424 1276 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 LSM3P4-201ENST00000502948 309 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 SNORA70.11-201ENST00000515987 138 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 SNORA70.13-201ENST00000516116 138 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 IGKV1D-22-201ENST00000518953 324 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 COX6B1P4-201ENST00000519826 484 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXD4P09016 IGLV3-6-201ENST00000523937 250 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 NANOGNBP2-201ENST00000544753 553 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXD4P09016 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AC093388.1-201ENST00000609166 430 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 FAM27E2-201ENST00000619668 403 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 OR7E91P-202ENST00000642062 1198 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC5.7□□□□□ -1.5
HOXD4P09016 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 AC009120.2-204ENST00000621548 2032 ntBASIC5.7□□□□□ -1.5
HOXD4P09016 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HOXD4P09016 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HOXD4P09016 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC5.7□□□□□ -1.5
HOXD4P09016 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.7□□□□□ -1.5
HOXD4P09016 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.7□□□□□ -1.5
HOXD4P09016 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms