Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC083795.1-201ENST00000491760 320 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC008629.2-201ENST00000503783 483 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC108103.1-201ENST00000511286 446 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC078899.1-201ENST00000521432 1185 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC090424.1-201ENST00000535243 736 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.4□□□□□ -1.38
SIX2Q9NPC8 HNRNPCP1-201ENST00000556181 766 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC006115.2-201ENST00000596823 202 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AC005828.7-201ENST00000607331 556 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 AL136228.1-201ENST00000622221 319 ntBASIC6.4□□□□□ -1.38
SIX2Q9NPC8 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SIX2Q9NPC8 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.4□□□□□ -1.38
SIX2Q9NPC8 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 AL731532.1-201ENST00000623972 4236 ntBASIC6.4□□□□□ -1.39
SIX2Q9NPC8 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 AL359955.1-201ENST00000455242 3275 ntBASIC6.4□□□□□ -1.39
SIX2Q9NPC8 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.4□□□□□ -1.39
SIX2Q9NPC8 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 SNRPEP6-201ENST00000407465 277 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 GAPDHP75-201ENST00000433910 943 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 PNKDP1-201ENST00000435914 430 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 RPL5P7-201ENST00000444235 813 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC097463.1-201ENST00000447288 481 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 HMGB1P7-201ENST00000450921 612 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 FRG2FP-204ENST00000453982 852 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 OSTCP1-201ENST00000455507 450 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 PFN1P6-201ENST00000476786 399 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC092349.1-201ENST00000504903 310 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 ST13P12-201ENST00000508958 1094 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 MIR2117-201ENST00000516780 80 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC016252.1-201ENST00000609721 474 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 MIR6809-201ENST00000612189 116 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 AC004801.6-201ENST00000616571 978 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 FAM27E2-201ENST00000619668 403 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 TEX41-271ENST00000628213 993 ntTSL 5 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 RBPJP7-201ENST00000442803 1447 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 RBPJP5-201ENST00000449433 1447 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 OR52B5P-204ENST00000641744 3467 ntBASIC6.39□□□□□ -1.39
SIX2Q9NPC8 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SIX2Q9NPC8 USP40-202ENST00000409945 1946 ntTSL 2 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 RN7SKP128-201ENST00000364270 303 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AL354890.1-201ENST00000413730 346 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 RPS4XP5-201ENST00000419038 768 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 RSU1P1-201ENST00000453416 441 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC004129.2-201ENST00000457229 287 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AL157777.1-201ENST00000468100 304 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC023245.1-201ENST00000468501 517 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC007346.2-201ENST00000564816 892 ntBASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.38□□□□□ -1.39
SIX2Q9NPC8 AL021918.2-201ENST00000613415 194 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms