Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC18.75■□□□□ 0.59
Col6a1Q04857 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.75■□□□□ 0.59
Col6a1Q04857 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.75■□□□□ 0.59
Col6a1Q04857 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Col6a1Q04857 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a1Q04857 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Col6a1Q04857 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Gm12895-201ENSMUST00000122214 226 ntBASIC18.74■□□□□ 0.59
Col6a1Q04857 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.74■□□□□ 0.59
Col6a1Q04857 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.74■□□□□ 0.59
Col6a1Q04857 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col6a1Q04857 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Col6a1Q04857 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a1Q04857 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Col6a1Q04857 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.73■□□□□ 0.59
Col6a1Q04857 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.73■□□□□ 0.59
Col6a1Q04857 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.73■□□□□ 0.59
Col6a1Q04857 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.73■□□□□ 0.59
Col6a1Q04857 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a1Q04857 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Col6a1Q04857 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC18.72■□□□□ 0.59
Col6a1Q04857 Gm18206-201ENSMUST00000207027 926 ntBASIC18.72■□□□□ 0.59
Col6a1Q04857 Gm18195-201ENSMUST00000207604 706 ntBASIC18.72■□□□□ 0.59
Col6a1Q04857 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC18.72■□□□□ 0.59
Col6a1Q04857 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.72■□□□□ 0.59
Col6a1Q04857 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a1Q04857 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a1Q04857 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a1Q04857 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a1Q04857 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Col6a1Q04857 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.71■□□□□ 0.59
Col6a1Q04857 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Col6a1Q04857 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC18.71■□□□□ 0.59
Col6a1Q04857 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.71■□□□□ 0.59
Col6a1Q04857 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Col6a1Q04857 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a1Q04857 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.71■□□□□ 0.59
Col6a1Q04857 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.71■□□□□ 0.59
Col6a1Q04857 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Col6a1Q04857 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Col6a1Q04857 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.7■□□□□ 0.58
Col6a1Q04857 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a1Q04857 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC18.7■□□□□ 0.58
Col6a1Q04857 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Col6a1Q04857 Gm11452-201ENSMUST00000122376 690 ntBASIC18.69■□□□□ 0.58
Col6a1Q04857 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC18.69■□□□□ 0.58
Col6a1Q04857 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Col6a1Q04857 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC18.69■□□□□ 0.58
Col6a1Q04857 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a1Q04857 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a1Q04857 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms