Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox1P53783 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox1P53783 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox1P53783 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
Sox1P53783 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Sox1P53783 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.36■□□□□ 0.37
Sox1P53783 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.36■□□□□ 0.37
Sox1P53783 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.36■□□□□ 0.37
Sox1P53783 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Sox1P53783 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.36■□□□□ 0.37
Sox1P53783 AC124603.1-201ENSMUST00000223843 308 ntBASIC17.36■□□□□ 0.37
Sox1P53783 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Sox1P53783 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Sox1P53783 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox1P53783 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC17.35■□□□□ 0.37
Sox1P53783 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.35■□□□□ 0.37
Sox1P53783 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC17.35■□□□□ 0.37
Sox1P53783 Gm27628-201ENSMUST00000184911 107 ntBASIC17.35■□□□□ 0.37
Sox1P53783 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox1P53783 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox1P53783 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Sox1P53783 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Sox1P53783 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.35■□□□□ 0.37
Sox1P53783 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Sox1P53783 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.34■□□□□ 0.37
Sox1P53783 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.34■□□□□ 0.37
Sox1P53783 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.34■□□□□ 0.37
Sox1P53783 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
Sox1P53783 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Sox1P53783 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC17.34■□□□□ 0.37
Sox1P53783 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Sox1P53783 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Sox1P53783 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Sox1P53783 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
Sox1P53783 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Sox1P53783 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sox1P53783 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sox1P53783 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Sox1P53783 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Sox1P53783 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.33■□□□□ 0.37
Sox1P53783 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.33■□□□□ 0.36
Sox1P53783 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Sox1P53783 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.33■□□□□ 0.36
Sox1P53783 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Sox1P53783 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.33■□□□□ 0.36
Sox1P53783 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Sox1P53783 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Sox1P53783 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Sox1P53783 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Sox1P53783 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox1P53783 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox1P53783 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.32■□□□□ 0.36
Sox1P53783 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
Sox1P53783 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Sox1P53783 Mir6956-201ENSMUST00000183598 62 ntBASIC17.32■□□□□ 0.36
Sox1P53783 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox1P53783 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Sox1P53783 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC17.32■□□□□ 0.36
Sox1P53783 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 66.3 ms