Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CFTRP2-201ENST00000634304 199 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 FO082842.1-201ENST00000423552 1370 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 NCALD-201ENST00000220931 3283 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 AC022034.1-201ENST00000512867 2156 ntBASIC6.27□□□□□ -1.41
COL28A1Q2UY09 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL28A1Q2UY09 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC010168.2-201ENST00000562691 5428 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC034229.2-201ENST00000566945 2508 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AKAP17BP-201ENST00000431706 2719 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 RNA5SP514-201ENST00000363717 111 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 PPIAP26-201ENST00000377951 522 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL050305.1-201ENST00000399993 1230 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 MTND3P20-201ENST00000407663 186 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 OSTCP4-201ENST00000424397 449 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 GAPDHP57-201ENST00000424400 585 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL355355.1-201ENST00000442900 793 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 DEFB109A-201ENST00000482450 265 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC021220.1-201ENST00000507445 630 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 OR9L1P-201ENST00000529493 933 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL049874.4-201ENST00000557593 255 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC011270.1-201ENST00000558606 583 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC026898.1-201ENST00000586404 571 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL035410.2-201ENST00000604963 864 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC004908.1-201ENST00000606572 541 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL353684.1-201ENST00000622677 1120 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AC129778.1-202ENST00000623812 261 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AL591379.1-207ENST00000635982 261 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.26□□□□□ -1.41
COL28A1Q2UY09 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
COL28A1Q2UY09 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 AP005139.1-201ENST00000580702 1647 ntBASIC6.25□□□□□ -1.41
COL28A1Q2UY09 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL28A1Q2UY09 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms