Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MTCYBP27-201ENST00000555160 670 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 AC106785.3-201ENST00000564064 847 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC7.34□□□□□ -1.23
COL6A1P12109 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 AC040904.1-201ENST00000590850 223 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 AL445435.1-201ENST00000604232 665 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AC093783.1-201ENST00000612976 329 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 AC009032.1-201ENST00000617574 431 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC7.34□□□□□ -1.23
COL6A1P12109 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC7.34□□□□□ -1.23
COL6A1P12109 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC7.34□□□□□ -1.23
COL6A1P12109 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC7.34□□□□□ -1.23
COL6A1P12109 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC7.34□□□□□ -1.23
COL6A1P12109 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
COL6A1P12109 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL6A1P12109 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC7.34□□□□□ -1.24
COL6A1P12109 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC7.34□□□□□ -1.24
COL6A1P12109 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.24
COL6A1P12109 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC7.33□□□□□ -1.24
COL6A1P12109 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 AC104837.1-201ENST00000444644 1587 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC7.33□□□□□ -1.24
COL6A1P12109 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 TCF12-207ENST00000557843 4076 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC005614.1-201ENST00000598952 3653 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
COL6A1P12109 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC7.33□□□□□ -1.24
COL6A1P12109 MRRF-207ENST00000373729 870 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 MIR122-201ENST00000385044 85 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 AL353692.2-201ENST00000407054 335 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AL663061.1-201ENST00000416625 580 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC7.33□□□□□ -1.24
COL6A1P12109 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC7.33□□□□□ -1.24
COL6A1P12109 RPL6P30-201ENST00000443382 862 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 RPL31P15-201ENST00000449770 338 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC002075.1-201ENST00000457396 676 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC007998.1-201ENST00000474156 672 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 RPS14P8-201ENST00000478778 369 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 RPEP1-201ENST00000504507 658 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC021220.1-201ENST00000507445 630 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 PRELID3BP5-201ENST00000508612 460 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 MTND2P32-201ENST00000521584 1038 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC015911.5-201ENST00000587076 451 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC010463.3-201ENST00000594077 500 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 AC005776.1-201ENST00000603164 290 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 MTATP6P2-201ENST00000603319 678 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AP001033.2-201ENST00000609701 1003 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC005156.1-201ENST00000613371 573 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 AC010998.3-201ENST00000613871 631 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 Six3os1_4.1-201ENST00000615706 324 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 REV3L-214ENST00000619481 969 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 CAST-202ENST00000325674 3356 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
COL6A1P12109 AC091305.2-201ENST00000624049 1576 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 THAP12P8-201ENST00000447914 2115 ntBASIC7.33□□□□□ -1.24
COL6A1P12109 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC7.33□□□□□ -1.24
COL6A1P12109 BCL2L14-211ENST00000586576 1927 ntTSL 5 BASIC7.33□□□□□ -1.24
COL6A1P12109 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.32□□□□□ -1.24
COL6A1P12109 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL6A1P12109 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms