Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 AC109638.1-201ENST00000417406 326 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 RPL22P11-201ENST00000434894 385 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 CUBNP2-201ENST00000443534 1139 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 RSU1P1-201ENST00000453416 441 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC018980.1-201ENST00000457848 862 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 RN7SL552P-201ENST00000462094 276 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 ASNSP4-201ENST00000511103 447 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 TPM3P3-201ENST00000521343 354 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC132192.1-201ENST00000531111 597 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 MIR4800-201ENST00000537353 80 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC009729.1-201ENST00000548873 1133 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXA3P55318 ZNF322P1-201ENST00000568013 1209 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 MIR5682-201ENST00000584864 76 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AP005131.5-201ENST00000585817 498 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 NDUFA3P1-201ENST00000588007 252 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 DYNLL1P1-201ENST00000595442 269 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 AC244196.5-201ENST00000617347 406 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXA3P55318 AC005753.1-201ENST00000623837 618 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 HBG1-202ENST00000632727 369 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 METTL15-210ENST00000634721 1182 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXA3P55318 AC027559.1-201ENST00000636288 271 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
FOXA3P55318 AC097063.1-201ENST00000426714 1797 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
FOXA3P55318 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 AC092701.1-201ENST00000623627 1551 ntBASIC4.57□□□□□ -1.68
FOXA3P55318 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA3P55318 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 AC016583.1-201ENST00000624221 2431 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 AC004158.1-201ENST00000564508 4319 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 PARP4P2-201ENST00000446672 3326 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 PPIAP24-201ENST00000328558 471 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXA3P55318 SNORD35A-201ENST00000363389 86 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 AC064874.1-201ENST00000409661 441 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA3P55318 RN7SKP281-201ENST00000410472 352 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA3P55318 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 AL359633.1-201ENST00000421403 310 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXA3P55318 AL596268.1-201ENST00000427910 1048 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA3P55318 OSTCP2-201ENST00000437956 444 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXA3P55318 CBX5P1-201ENST00000468470 561 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 UOX-201ENST00000471089 899 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 PFN2-209ENST00000481275 560 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA3P55318 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA3P55318 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA3P55318 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA3P55318 TMEM132D-AS1-207ENST00000542535 442 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 TPRX1P1-201ENST00000557620 319 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA3P55318 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA3P55318 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA3P55318 MIR5705-201ENST00000579870 89 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 AC011193.2-201ENST00000582638 367 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA3P55318 PRR13P3-201ENST00000603578 376 ntBASIC4.56□□□□□ -1.68
FOXA3P55318 PDE4DIP-241ENST00000616206 874 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA3P55318 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA3P55318 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA3P55318 KCNJ10-204ENST00000637644 1239 ntTSL 5 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms