Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AP003033.2-201ENST00000528901 805 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 OSTC-205ENST00000613215 876 ntTSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 NF1P10-201ENST00000613227 742 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC089999.3-201ENST00000622440 577 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 OR8A1-204ENST00000642111 1145 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 RPL31P11-201ENST00000426558 1558 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 RLIMP2-201ENST00000427891 1563 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 MAPK10-344ENST00000641718 3746 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 OR2M1P-201ENST00000318104 951 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AL050335.1-201ENST00000396909 869 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AL359885.1-201ENST00000415786 903 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 THEM7P-201ENST00000419556 672 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AL139415.1-201ENST00000424862 352 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC063943.2-201ENST00000495697 534 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC117500.1-201ENST00000497352 755 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 OLR1-209ENST00000543993 822 ntTSL 2 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC083837.1-201ENST00000565297 2994 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 SNORD39.2-201ENST00000579995 76 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AL078623.1-201ENST00000602702 907 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AL356608.1-201ENST00000610034 820 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 MIR6811-201ENST00000620409 58 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC010325.3-201ENST00000641084 394 ntBASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CHMP4AQ9BY43 AC011455.2-201ENST00000599320 3336 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AL023284.3-201ENST00000407767 334 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 REREP1Y-201ENST00000422655 198 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 REREP2Y-201ENST00000439103 200 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 RPS27P20-201ENST00000492051 246 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 RPL5P14-201ENST00000494197 878 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC018645.1-201ENST00000505003 109 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC091965.3-201ENST00000506236 208 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AP001000.1-201ENST00000526843 742 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC135983.3-201ENST00000528049 1226 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 OR4A41P-201ENST00000533053 928 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC121758.1-202ENST00000556917 658 ntBASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 RACK1-235ENST00000626067 564 ntTSL 2 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC8.36□□□□□ -1.07
CHMP4AQ9BY43 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CHMP4AQ9BY43 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 232 ms