Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RN7SKP129-201ENST00000410288 299 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AL356481.1-202ENST00000426704 970 ntTSL 2 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 ARAFP2-201ENST00000440565 559 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC234771.2-201ENST00000445718 597 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC106800.2-201ENST00000514009 1103 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 MIR5095-201ENST00000578844 88 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC138207.8-204ENST00000579588 527 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC011500.1-201ENST00000601963 469 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC013731.1-201ENST00000604340 883 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AP001264.1-201ENST00000620602 703 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 LARS-212ENST00000510191 3737 ntTSL 2 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.07
CHMP4AQ9BY43 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC8.4□□□□□ -1.07
CHMP4AQ9BY43 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC8.4□□□□□ -1.07
CHMP4AQ9BY43 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
CHMP4AQ9BY43 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.07
CHMP4AQ9BY43 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC003973.3-201ENST00000624863 2822 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 MTCO1P15-201ENST00000529569 1526 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 EEF1A1P12-201ENST00000443590 1346 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 RN7SKP250-201ENST00000363924 321 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 RNU1-84P-201ENST00000365447 164 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 OR13C3-201ENST00000374781 1108 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 PSMA6P1-201ENST00000400275 741 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 HMGB3P10-201ENST00000434734 572 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC026254.2-201ENST00000475295 371 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 RN7SL568P-201ENST00000493069 298 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 CYCSP25-201ENST00000525280 316 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC073488.9-201ENST00000631601 754 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 LINC01613-201ENST00000561476 2780 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 AC015689.2-201ENST00000528172 1738 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 GLYATL1P1-201ENST00000528297 1607 ntBASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
CHMP4AQ9BY43 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 DMD-202ENST00000343523 5623 ntTSL 5 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC010624.4-201ENST00000597606 1351 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 RFPL3S-201ENST00000382084 1117 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 RPL7P58-201ENST00000402913 758 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC083862.1-201ENST00000427378 1242 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC092601.1-201ENST00000444526 383 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 OR6C72P-201ENST00000451403 892 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 AC092349.1-201ENST00000504903 310 ntBASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC8.38□□□□□ -1.07
CHMP4AQ9BY43 IGLV3-6-201ENST00000523937 250 ntBASIC8.38□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms