Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 Y_RNA.667-201ENST00000516212 107 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL049840.5-201ENST00000602827 552 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 USP46-202ENST00000451218 4622 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SNORA58B-201ENST00000364259 136 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SUGT1P2-201ENST00000379452 992 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL031985.1-201ENST00000392713 418 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC007394.1-201ENST00000421941 531 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 EIF4A1P6-201ENST00000448133 1210 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL133351.3-201ENST00000454998 193 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC110749.1-201ENST00000462007 357 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC008429.4-201ENST00000521201 182 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OR4A21P-201ENST00000532759 944 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 NANOGNBP2-201ENST00000544753 553 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AP005136.2-201ENST00000583253 1049 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL513218.1-201ENST00000606527 391 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL034408.1-201ENST00000637712 664 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 CREM-203ENST00000344351 1625 ntTSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 IGHV3-57-201ENST00000520143 280 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC027369.2-201ENST00000528030 440 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 EEF1A1P24-201ENST00000451469 1378 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ACPP-201ENST00000336375 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL590762.1-201ENST00000391782 432 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC008753.1-201ENST00000423096 284 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 RPS10P20-201ENST00000494130 463 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AL390198.2-201ENST00000510553 222 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MIR6768-201ENST00000610734 72 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC079776.5-201ENST00000641920 211 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AC053481.2-202ENST00000582394 1500 ntBASIC1.94□□□□□ -2.1
SYNE1Q8NF91 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
SYNE1Q8NF91 TTC41P-205ENST00000551270 3963 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC009962.1-201ENST00000567327 3813 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL132875.1-201ENST00000403623 949 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RPL21P50-201ENST00000417698 477 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 CDK7P1-201ENST00000434574 693 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RPL6P30-201ENST00000443382 862 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RPL12P31-201ENST00000478433 450 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 RN7SL705P-201ENST00000481678 294 ntBASIC1.93□□□□□ -2.1
SYNE1Q8NF91 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC1.93□□□□□ -2.1
SYNE1Q8NF91 IGKV2-18-201ENST00000522607 343 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms