Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 BET1P1-201ENST00000482276 359 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC010486.2-201ENST00000505572 483 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC008549.1-201ENST00000512900 643 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 NAT2-202ENST00000520116 716 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC079866.1-201ENST00000534985 1220 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AP000919.1-201ENST00000582850 985 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 NBR2-204ENST00000587322 63 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AL589765.5-201ENST00000596133 515 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC027334.1-201ENST00000603257 310 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC113368.1-201ENST00000603736 382 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 U91328.4-201ENST00000608919 517 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC006338.2-201ENST00000616864 791 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 pRNA.9-201ENST00000618609 89 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AL035661.1-201ENST00000620459 1144 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC131009.3-201ENST00000621809 287 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AC012629.3-201ENST00000623397 328 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 AP006248.3-201ENST00000623580 594 ntBASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 ZNF438-203ENST00000375311 2173 ntAPPRIS ALT2 TSL 2 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 C1D-202ENST00000407324 1379 ntTSL 3 BASIC7.97□□□□□ -1.13
CCDC39Q9UFE4 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 MFSD8-220ENST00000641243 1422 ntBASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 SLC2A3P2-201ENST00000331747 1480 ntBASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 AL356361.1-201ENST00000400943 1459 ntBASIC7.96□□□□□ -1.13
CCDC39Q9UFE4 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC007114.2-201ENST00000576014 4281 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 FUNDC2P3-201ENST00000334716 533 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 SERPINB12-202ENST00000382768 1278 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC016831.2-201ENST00000417179 352 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 EIF4A1P2-201ENST00000422633 1220 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 CYP4F34P-201ENST00000425951 481 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 MYO5BP3-201ENST00000431872 1279 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 NMNAT1P2-201ENST00000435192 860 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 SEPT7P2-208ENST00000444755 505 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 RPL21P33-201ENST00000444831 484 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 VN1R96P-201ENST00000446052 858 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 RPL7P61-201ENST00000451721 751 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 NDUFB4P1-201ENST00000462398 381 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 NAMPTP2-201ENST00000505629 1115 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC021193.1-201ENST00000511607 420 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC097460.2-201ENST00000511857 741 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 GLYATL1P4-201ENST00000529326 906 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 OR5M4P-201ENST00000529436 925 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC126323.5-201ENST00000569913 592 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 MIR4258-201ENST00000580920 91 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC008734.1-201ENST00000594006 537 ntTSL 2 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC012640.3-201ENST00000607847 430 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AP000864.1-201ENST00000609424 650 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AL445493.3-201ENST00000619568 477 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC008115.4-201ENST00000619780 775 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AP003476.1-201ENST00000623984 516 ntBASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC7.96□□□□□ -1.14
CCDC39Q9UFE4 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms