Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC092601.1-201ENST00000444526 383 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 RPL3P13-201ENST00000550415 216 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL157871.4-201ENST00000557226 385 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 SYPL1P2-201ENST00000582878 727 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC125494.2-201ENST00000602431 657 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL034374.2-201ENST00000605281 548 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL132640.3-201ENST00000630473 177 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 LINC02495-203ENST00000636704 242 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AL731556.1-201ENST00000394628 3711 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC5.67□□□□□ -1.5
SKA3Q8IX90 XKRY2-202ENST00000623874 1581 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 XKRY-202ENST00000624960 1581 ntBASIC5.67□□□□□ -1.5
SKA3Q8IX90 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SKA3Q8IX90 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC217777.1-201ENST00000570034 1471 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 MIR551B-201ENST00000384984 96 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 VIM2P-201ENST00000402383 1294 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 MRPS21P5-201ENST00000417885 231 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 TRGV5P-201ENST00000419915 354 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC083862.1-201ENST00000427378 1242 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 OR6R1P-201ENST00000431838 940 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC064862.5-201ENST00000440618 334 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 CCNJP2-201ENST00000457810 1163 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 RN7SL393P-201ENST00000463588 296 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC018645.1-201ENST00000505003 109 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 MRPS5P3-201ENST00000515577 166 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 DCN-209ENST00000546745 1026 ntTSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 NQO2-209ENST00000606474 470 ntTSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AL589743.6-201ENST00000611025 117 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 GAPDHP41-201ENST00000613707 975 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SKA3Q8IX90 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 AL161912.4-201ENST00000623889 2468 ntBASIC5.66□□□□□ -1.5
SKA3Q8IX90 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SKA3Q8IX90 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SKA3Q8IX90 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 RPL31P11-201ENST00000426558 1558 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 GTDC1-212ENST00000463875 1563 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SKA3Q8IX90 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SKA3Q8IX90 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 RNA5SP350-201ENST00000363298 111 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 RN7SKP281-201ENST00000410472 352 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 GAPDHP19-201ENST00000431768 1005 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 NACAP5-201ENST00000509863 636 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms