Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim11Q99PQ2 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Trim11Q99PQ2 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Gm13168-201ENSMUST00000121771 632 ntBASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim11Q99PQ2 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Gm45244-201ENSMUST00000211328 2200 ntBASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim11Q99PQ2 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim11Q99PQ2 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
Trim11Q99PQ2 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim11Q99PQ2 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim11Q99PQ2 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Trim11Q99PQ2 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.36■□□□□ 0.69
Trim11Q99PQ2 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms