Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.29■□□□□ 0.68
Syne4Q8CII8 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC19.29■□□□□ 0.68
Syne4Q8CII8 Gm37935-201ENSMUST00000192012 982 ntBASIC19.29■□□□□ 0.68
Syne4Q8CII8 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Syne4Q8CII8 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Syne4Q8CII8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Syne4Q8CII8 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.28■□□□□ 0.68
Syne4Q8CII8 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.28■□□□□ 0.68
Syne4Q8CII8 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.28■□□□□ 0.68
Syne4Q8CII8 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Syne4Q8CII8 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Syne4Q8CII8 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Syne4Q8CII8 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.26■□□□□ 0.67
Syne4Q8CII8 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Syne4Q8CII8 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.25■□□□□ 0.67
Syne4Q8CII8 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.25■□□□□ 0.67
Syne4Q8CII8 Gm6376-201ENSMUST00000209407 580 ntBASIC19.25■□□□□ 0.67
Syne4Q8CII8 Cmtm5-203ENSMUST00000227441 610 ntBASIC19.25■□□□□ 0.67
Syne4Q8CII8 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 87.1 ms