Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.81■□□□□ 0.28
Ubp1Q811S7 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC16.8■□□□□ 0.28
Ubp1Q811S7 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Gm7791-201ENSMUST00000219066 539 ntBASIC16.8■□□□□ 0.28
Ubp1Q811S7 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Ubp1Q811S7 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC16.8■□□□□ 0.28
Ubp1Q811S7 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.79■□□□□ 0.28
Ubp1Q811S7 Gm11539-201ENSMUST00000119837 557 ntBASIC16.79■□□□□ 0.28
Ubp1Q811S7 Gm13436-201ENSMUST00000120418 567 ntBASIC16.79■□□□□ 0.28
Ubp1Q811S7 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Gm27463-201ENSMUST00000183569 57 ntBASIC16.79■□□□□ 0.28
Ubp1Q811S7 Gm43353-201ENSMUST00000199224 1295 ntBASIC16.79■□□□□ 0.28
Ubp1Q811S7 Gm9731-201ENSMUST00000209480 747 ntBASIC16.79■□□□□ 0.28
Ubp1Q811S7 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Ubp1Q811S7 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Krtap5-1-202ENSMUST00000188274 742 ntBASIC16.78■□□□□ 0.28
Ubp1Q811S7 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Ubp1Q811S7 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Gm17661-201ENSMUST00000170317 270 ntBASIC16.77■□□□□ 0.28
Ubp1Q811S7 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC16.77■□□□□ 0.28
Ubp1Q811S7 Gm43799-201ENSMUST00000201845 579 ntBASIC16.77■□□□□ 0.28
Ubp1Q811S7 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubp1Q811S7 AC153881.2-201ENSMUST00000214877 204 ntBASIC16.77■□□□□ 0.28
Ubp1Q811S7 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Ubp1Q811S7 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms