Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
Col17a1Q07563 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC26.36■■□□□ 1.81
Col17a1Q07563 Gm3928-201ENSMUST00000121141 1307 ntBASIC26.36■■□□□ 1.81
Col17a1Q07563 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 AC159295.1-201ENSMUST00000225326 940 ntBASIC26.36■■□□□ 1.81
Col17a1Q07563 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Col17a1Q07563 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col17a1Q07563 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col17a1Q07563 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
Col17a1Q07563 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Col17a1Q07563 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Col17a1Q07563 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Col17a1Q07563 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
Col17a1Q07563 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Col17a1Q07563 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Col17a1Q07563 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC26.33■■□□□ 1.81
Col17a1Q07563 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC26.33■■□□□ 1.81
Col17a1Q07563 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Gm20634-201ENSMUST00000090779 2956 ntBASIC26.33■■□□□ 1.81
Col17a1Q07563 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Col17a1Q07563 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.8
Col17a1Q07563 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
Col17a1Q07563 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC26.33■■□□□ 1.8
Col17a1Q07563 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
Col17a1Q07563 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Col17a1Q07563 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
Col17a1Q07563 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC26.31■■□□□ 1.8
Col17a1Q07563 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC26.31■■□□□ 1.8
Col17a1Q07563 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC26.31■■□□□ 1.8
Col17a1Q07563 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col17a1Q07563 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col17a1Q07563 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col17a1Q07563 AC127349.1-201ENSMUST00000224590 266 ntBASIC26.31■■□□□ 1.8
Col17a1Q07563 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
Col17a1Q07563 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col17a1Q07563 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Col17a1Q07563 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Col17a1Q07563 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col17a1Q07563 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC26.3■■□□□ 1.8
Col17a1Q07563 Gm5866-201ENSMUST00000177881 973 ntBASIC26.3■■□□□ 1.8
Col17a1Q07563 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC26.3■■□□□ 1.8
Col17a1Q07563 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col17a1Q07563 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col17a1Q07563 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Col17a1Q07563 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col17a1Q07563 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col17a1Q07563 Gm25948-201ENSMUST00000175334 112 ntBASIC26.3■■□□□ 1.8
Col17a1Q07563 Gm18421-201ENSMUST00000204122 625 ntBASIC26.3■■□□□ 1.8
Col17a1Q07563 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Col17a1Q07563 Rassf8-202ENSMUST00000058538 1131 ntBASIC26.3■■□□□ 1.8
Col17a1Q07563 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Col17a1Q07563 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Col17a1Q07563 Gm15222-202ENSMUST00000228667 1726 ntBASIC26.29■■□□□ 1.8
Col17a1Q07563 Gm17271-201ENSMUST00000165535 355 ntBASIC26.29■■□□□ 1.8
Col17a1Q07563 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC26.29■■□□□ 1.8
Col17a1Q07563 AC125206.2-201ENSMUST00000217454 574 ntBASIC26.29■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms