Protein–RNA interactions for Protein: O88543

Cops3, COP9 signalosome complex subunit 3, mousemouse

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops3O88543 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.3■□□□□ 0.04
Cops3O88543 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Gm11643-201ENSMUST00000119578 864 ntBASIC15.29■□□□□ 0.04
Cops3O88543 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cops3O88543 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cops3O88543 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cops3O88543 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cops3O88543 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.29■□□□□ 0.04
Cops3O88543 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cops3O88543 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cops3O88543 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cops3O88543 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Cops3O88543 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Cops3O88543 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Mir6349-201ENSMUST00000184059 97 ntBASIC15.28■□□□□ 0.04
Cops3O88543 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC15.28■□□□□ 0.04
Cops3O88543 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Gm4968-201ENSMUST00000071458 858 ntBASIC15.28■□□□□ 0.04
Cops3O88543 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Cops3O88543 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cops3O88543 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.28■□□□□ 0.04
Cops3O88543 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC15.28■□□□□ 0.04
Cops3O88543 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
Cops3O88543 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cops3O88543 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Gm26596-201ENSMUST00000180464 2655 ntBASIC15.27■□□□□ 0.04
Cops3O88543 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC15.27■□□□□ 0.04
Cops3O88543 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Cops3O88543 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC15.27■□□□□ 0.04
Cops3O88543 Gm5408-201ENSMUST00000197998 747 ntBASIC15.27■□□□□ 0.04
Cops3O88543 Gm10138-203ENSMUST00000206952 366 ntBASIC15.27■□□□□ 0.04
Cops3O88543 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Cops3O88543 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC15.27■□□□□ 0.04
Cops3O88543 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cops3O88543 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops3O88543 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cops3O88543 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops3O88543 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops3O88543 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops3O88543 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC15.27■□□□□ 0.03
Cops3O88543 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops3O88543 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cops3O88543 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.27■□□□□ 0.03
Cops3O88543 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.26■□□□□ 0.03
Cops3O88543 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Gm13216-201ENSMUST00000117145 591 ntBASIC15.26■□□□□ 0.03
Cops3O88543 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Cops3O88543 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Cops3O88543 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Cops3O88543 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Cops3O88543 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.26■□□□□ 0.03
Cops3O88543 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Cops3O88543 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cops3O88543 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC15.26■□□□□ 0.03
Cops3O88543 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms