Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smarce1O54941 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Smarce1O54941 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC20.29■□□□□ 0.84
Smarce1O54941 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Smarce1O54941 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC20.29■□□□□ 0.84
Smarce1O54941 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Smarce1O54941 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smarce1O54941 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarce1O54941 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Smarce1O54941 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC20.28■□□□□ 0.84
Smarce1O54941 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smarce1O54941 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC20.28■□□□□ 0.84
Smarce1O54941 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Smarce1O54941 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smarce1O54941 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarce1O54941 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smarce1O54941 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Smarce1O54941 Gm8839-201ENSMUST00000121279 1645 ntBASIC20.27■□□□□ 0.84
Smarce1O54941 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Smarce1O54941 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Gm42545-201ENSMUST00000202755 922 ntBASIC20.27■□□□□ 0.84
Smarce1O54941 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smarce1O54941 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Smarce1O54941 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Smarce1O54941 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Smarce1O54941 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Smarce1O54941 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Smarce1O54941 Gm12382-201ENSMUST00000122005 922 ntBASIC20.26■□□□□ 0.83
Smarce1O54941 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.26■□□□□ 0.83
Smarce1O54941 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.26■□□□□ 0.83
Smarce1O54941 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Smarce1O54941 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smarce1O54941 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.25■□□□□ 0.83
Smarce1O54941 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Smarce1O54941 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Smarce1O54941 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.25■□□□□ 0.83
Smarce1O54941 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.25■□□□□ 0.83
Smarce1O54941 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smarce1O54941 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.24■□□□□ 0.83
Smarce1O54941 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
Smarce1O54941 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Smarce1O54941 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smarce1O54941 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms