Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC7.75□□□□□ -1.17
COL5A3P25940 RPL36AP39-201ENST00000445859 318 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 HMGN2P36-201ENST00000529541 409 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.75□□□□□ -1.17
COL5A3P25940 AP000864.1-201ENST00000609424 650 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 AC109780.1-201ENST00000451768 1344 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC7.75□□□□□ -1.17
COL5A3P25940 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
COL5A3P25940 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 MFSD8-217ENST00000641178 4374 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 AP003972.1-201ENST00000625192 5446 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
COL5A3P25940 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.75□□□□□ -1.17
COL5A3P25940 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
COL5A3P25940 MAPK10-344ENST00000641718 3746 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
COL5A3P25940 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
COL5A3P25940 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC7.75□□□□□ -1.17
COL5A3P25940 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC7.75□□□□□ -1.17
COL5A3P25940 OR13C1P-201ENST00000457612 963 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC005244.1-201ENST00000582566 339 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC7.75□□□□□ -1.17
COL5A3P25940 AC025809.2-201ENST00000625085 1802 ntBASIC7.75□□□□□ -1.17
COL5A3P25940 EEF1A1P24-201ENST00000451469 1378 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC7.74□□□□□ -1.17
COL5A3P25940 ADH4-209ENST00000508393 2151 ntTSL 2 BASIC7.74□□□□□ -1.17
COL5A3P25940 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 RN7SKP162-201ENST00000363605 345 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC7.74□□□□□ -1.17
COL5A3P25940 SEPT14P12-201ENST00000442280 560 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 MYO5BP2-201ENST00000449815 1277 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.74□□□□□ -1.17
COL5A3P25940 TSACC-207ENST00000470342 601 ntTSL 2 BASIC7.74□□□□□ -1.17
COL5A3P25940 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC7.74□□□□□ -1.17
COL5A3P25940 AC138866.2-201ENST00000508650 584 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 AL021918.2-201ENST00000613415 194 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC7.74□□□□□ -1.17
COL5A3P25940 HDAC1P2-201ENST00000453661 1398 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 MARK2P4-201ENST00000503381 2380 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
COL5A3P25940 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
COL5A3P25940 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC7.74□□□□□ -1.17
COL5A3P25940 AL591848.4-201ENST00000567832 3472 ntBASIC7.74□□□□□ -1.17
COL5A3P25940 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
COL5A3P25940 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 AC024587.1-201ENST00000505925 2157 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
COL5A3P25940 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 AMELX-201ENST00000348912 737 ntTSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
COL5A3P25940 RPL36P18-201ENST00000419316 318 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC7.73□□□□□ -1.17
COL5A3P25940 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC7.73□□□□□ -1.17
COL5A3P25940 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC7.73□□□□□ -1.17
COL5A3P25940 AC092967.1-201ENST00000449016 481 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AL157777.1-201ENST00000468100 304 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC010343.2-201ENST00000510162 224 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC110056.1-201ENST00000525759 911 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC027026.1-201ENST00000532323 742 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC006530.1-201ENST00000555980 571 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC7.73□□□□□ -1.17
COL5A3P25940 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC7.73□□□□□ -1.17
COL5A3P25940 MIR4776-2-201ENST00000580204 80 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AL589674.2-201ENST00000604304 337 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC079395.2-201ENST00000610982 737 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 AC012254.5-201ENST00000623573 478 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 PDZK1P1-202ENST00000425209 1350 ntBASIC7.73□□□□□ -1.17
COL5A3P25940 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.73□□□□□ -1.17
COL5A3P25940 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL5A3P25940 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 367.4 ms