Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.04□□□□□ -1.44
HOXD4P09016 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
HOXD4P09016 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXD4P09016 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.03□□□□□ -1.44
HOXD4P09016 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
HOXD4P09016 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
HOXD4P09016 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 OR11H13P-201ENST00000359695 979 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 RN7SKP269-201ENST00000365545 319 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 SEPT7P2-202ENST00000398921 823 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 MIR1275-201ENST00000408770 80 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.03□□□□□ -1.44
HOXD4P09016 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXD4P09016 RN7SKP188-201ENST00000410789 317 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 AL139158.1-201ENST00000424719 340 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.03□□□□□ -1.44
HOXD4P09016 COL11A2P1-205ENST00000441798 676 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 RPL23AP28-201ENST00000448062 470 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC133965.1-201ENST00000452984 354 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC083806.1-201ENST00000468934 316 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 RN7SL382P-201ENST00000482631 282 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC122713.1-201ENST00000518368 1015 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 IGKV2-4-201ENST00000523070 340 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 TOMM20P1-201ENST00000534518 427 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC124891.1-201ENST00000536322 519 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC037479.1-201ENST00000558361 625 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC6.03□□□□□ -1.44
HOXD4P09016 AC134669.1-201ENST00000581275 672 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC015818.6-201ENST00000584274 634 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 AL035410.2-201ENST00000604963 864 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC091768.1-201ENST00000609258 930 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 U1.41-201ENST00000617626 165 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 MIR6861-201ENST00000618657 64 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 RAB28P4-201ENST00000622233 665 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 AC061999.1-201ENST00000624454 177 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 SNORA16A-202ENST00000628458 135 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC6.03□□□□□ -1.44
HOXD4P09016 5S_rRNA.29-201ENST00000641250 107 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 AC027575.3-201ENST00000583058 2747 ntBASIC6.03□□□□□ -1.44
HOXD4P09016 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXD4P09016 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
HOXD4P09016 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 AC137056.2-201ENST00000624055 1958 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
HOXD4P09016 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXD4P09016 BRD7P1-201ENST00000557705 1915 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXD4P09016 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXD4P09016 AC068769.1-201ENST00000474767 2426 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 SNORD35A-201ENST00000363389 86 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 NOX1-203ENST00000372964 661 ntTSL 2 BASIC6.02□□□□□ -1.45
HOXD4P09016 AC079807.1-201ENST00000429993 481 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXD4P09016 PFN1P11-201ENST00000445829 389 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 REG1CP-206ENST00000447469 496 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 RPL26P30-201ENST00000453533 435 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXD4P09016 AC104339.1-201ENST00000465478 348 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 RPS10P20-201ENST00000494130 463 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXD4P09016 RN7SKP248-201ENST00000516278 305 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 AC140063.1-201ENST00000541343 259 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6.02□□□□□ -1.45
HOXD4P09016 AL445383.1-201ENST00000554689 874 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC6.02□□□□□ -1.45
HOXD4P09016 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
HOXD4P09016 NDUFA5P11-201ENST00000567995 343 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC025283.1-201ENST00000572039 734 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 RPL29P33-201ENST00000587474 316 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 AC012368.3-201ENST00000604190 219 ntBASIC6.02□□□□□ -1.45
HOXD4P09016 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms