Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 SNORA27.3-201ENST00000364937 134 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 RNU1-56P-201ENST00000391303 164 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC8.14□□□□□ -1.11
HMGB1P09429 FDPSP6-201ENST00000425091 512 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AC009518.3-201ENST00000438972 253 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC8.14□□□□□ -1.11
HMGB1P09429 CYCSP51-201ENST00000443545 318 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AL353898.1-201ENST00000444055 238 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 HBG2-204ENST00000444587 307 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 AL929410.2-201ENST00000451170 189 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 CALM1P2-201ENST00000452941 448 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 RPS26P11-201ENST00000463445 348 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 UCK2-206ENST00000470820 1083 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 AC128716.1-201ENST00000475129 166 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 RPS26P6-201ENST00000475156 348 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AC117395.1-201ENST00000487390 403 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC8.14□□□□□ -1.11
HMGB1P09429 RPL7L1P7-201ENST00000509986 724 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC8.14□□□□□ -1.11
HMGB1P09429 EGFLAM-211ENST00000514476 676 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC8.14□□□□□ -1.11
HMGB1P09429 RPS27AP18-201ENST00000515536 459 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 RNA5SP278-201ENST00000517055 102 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AC122713.1-201ENST00000518368 1015 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AP002336.1-201ENST00000531426 422 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC8.14□□□□□ -1.11
HMGB1P09429 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC8.14□□□□□ -1.11
HMGB1P09429 C14orf119-202ENST00000554203 725 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC8.14□□□□□ -1.11
HMGB1P09429 AC004908.1-201ENST00000606572 541 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AL118508.4-201ENST00000624142 1176 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AC017037.4-201ENST00000624526 826 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 AC243725.1-201ENST00000637164 436 ntBASIC8.14□□□□□ -1.11
HMGB1P09429 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC8.14□□□□□ -1.11
HMGB1P09429 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
HMGB1P09429 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 LARS-212ENST00000510191 3737 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 AL034374.1-201ENST00000406329 351 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 RN7SKP268-201ENST00000411107 316 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AL731684.1-201ENST00000415530 439 ntTSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC8.13□□□□□ -1.11
HMGB1P09429 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 AL590623.1-201ENST00000427864 105 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 PSMD8P1-201ENST00000436275 769 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 AC015983.1-201ENST00000441577 373 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 AL136528.1-201ENST00000443034 754 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 CRYGGP-201ENST00000443337 145 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 RN7SL456P-201ENST00000469290 295 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 RN7SL518P-201ENST00000491887 280 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AC021146.7-201ENST00000509604 775 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AC018953.1-201ENST00000523265 730 ntTSL 2 BASIC8.13□□□□□ -1.11
HMGB1P09429 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 AC068254.1-201ENST00000584753 483 ntTSL 3 BASIC8.13□□□□□ -1.11
HMGB1P09429 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 AC024085.1-201ENST00000604299 432 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AL353729.2-201ENST00000605859 1249 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AC009032.1-201ENST00000617574 431 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 AC025287.2-201ENST00000621911 668 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 AL121950.1-201ENST00000624993 2077 ntBASIC8.13□□□□□ -1.11
HMGB1P09429 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
HMGB1P09429 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC8.13□□□□□ -1.11
HMGB1P09429 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
HMGB1P09429 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms