Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Lima1Q9ERG0 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Zfp783-201ENSMUST00000095946 670 ntBASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Lima1Q9ERG0 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Gm44672-201ENSMUST00000206944 1098 ntBASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Lima1Q9ERG0 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Lima1Q9ERG0 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Flg-201ENSMUST00000050758 1488 ntBASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Lima1Q9ERG0 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Gm4968-201ENSMUST00000071458 858 ntBASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Lima1Q9ERG0 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Gm29791-202ENSMUST00000207888 369 ntBASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Lima1Q9ERG0 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms