Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Syne4Q8CII8 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Syne4Q8CII8 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Syne4Q8CII8 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Syne4Q8CII8 Gm9449-201ENSMUST00000207265 1011 ntBASIC19.33■□□□□ 0.68
Syne4Q8CII8 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.33■□□□□ 0.68
Syne4Q8CII8 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Syne4Q8CII8 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Syne4Q8CII8 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Gm1818-201ENSMUST00000169406 1184 ntBASIC19.31■□□□□ 0.68
Syne4Q8CII8 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Gm2651-201ENSMUST00000203560 838 ntBASIC19.31■□□□□ 0.68
Syne4Q8CII8 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Rps4l-201ENSMUST00000071745 943 ntBASIC19.31■□□□□ 0.68
Syne4Q8CII8 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Syne4Q8CII8 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Gm5712-201ENSMUST00000199748 1043 ntBASIC19.3■□□□□ 0.68
Syne4Q8CII8 AC132104.2-201ENSMUST00000215011 266 ntBASIC19.3■□□□□ 0.68
Syne4Q8CII8 AC161829.1-201ENSMUST00000220298 281 ntBASIC19.3■□□□□ 0.68
Syne4Q8CII8 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Syne4Q8CII8 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms