Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.64■□□□□ 0.25
Col28a1Q2UY11 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Col28a1Q2UY11 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col28a1Q2UY11 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Rab3c-203ENSMUST00000224180 967 ntBASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Col28a1Q2UY11 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Col28a1Q2UY11 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Gm10418-201ENSMUST00000100943 576 ntBASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col28a1Q2UY11 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col28a1Q2UY11 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
Col28a1Q2UY11 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.58■□□□□ 0.25
Col28a1Q2UY11 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col28a1Q2UY11 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col28a1Q2UY11 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col28a1Q2UY11 Gm27275-201ENSMUST00000184318 272 ntBASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col28a1Q2UY11 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms