Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col1a1P11087 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC20.02■□□□□ 0.79
Col1a1P11087 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Col1a1P11087 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Col1a1P11087 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Col1a1P11087 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44357-201ENSMUST00000195897 142 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm19658-201ENSMUST00000196231 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44367-201ENSMUST00000196836 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44350-201ENSMUST00000197197 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44390-201ENSMUST00000197533 144 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44313-201ENSMUST00000198018 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44486-201ENSMUST00000198508 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44454-201ENSMUST00000198541 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44314-201ENSMUST00000199263 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44394-201ENSMUST00000199558 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44484-201ENSMUST00000199873 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44466-201ENSMUST00000200264 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm44359-201ENSMUST00000200671 138 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Gm18421-201ENSMUST00000204122 625 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC20.01■□□□□ 0.79
Col1a1P11087 Cmtm5-203ENSMUST00000227441 610 ntBASIC20.01■□□□□ 0.79
Col1a1P11087 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col1a1P11087 Grk6-206ENSMUST00000224995 2971 ntBASIC20■□□□□ 0.79
Col1a1P11087 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col1a1P11087 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col1a1P11087 Gm7862-201ENSMUST00000121461 292 ntBASIC20■□□□□ 0.79
Col1a1P11087 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC20■□□□□ 0.79
Col1a1P11087 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col1a1P11087 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Col1a1P11087 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col1a1P11087 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC20■□□□□ 0.79
Col1a1P11087 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col1a1P11087 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC20■□□□□ 0.79
Col1a1P11087 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col1a1P11087 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Gm1401-201ENSMUST00000122048 772 ntBASIC19.99■□□□□ 0.79
Col1a1P11087 Mir5131-201ENSMUST00000175426 93 ntBASIC19.99■□□□□ 0.79
Col1a1P11087 Gm13830-205ENSMUST00000201195 1155 ntBASIC19.99■□□□□ 0.79
Col1a1P11087 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC19.99■□□□□ 0.79
Col1a1P11087 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Col1a1P11087 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC19.99■□□□□ 0.79
Col1a1P11087 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Col1a1P11087 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col1a1P11087 Gm6296-201ENSMUST00000222599 943 ntBASIC19.99■□□□□ 0.79
Col1a1P11087 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Gm15165-201ENSMUST00000118140 502 ntBASIC19.98■□□□□ 0.79
Col1a1P11087 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col1a1P11087 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
Col1a1P11087 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Col1a1P11087 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Col1a1P11087 Gm6376-201ENSMUST00000209407 580 ntBASIC19.97■□□□□ 0.79
Col1a1P11087 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC19.97■□□□□ 0.79
Col1a1P11087 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Col1a1P11087 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col1a1P11087 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Col1a1P11087 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col1a1P11087 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col1a1P11087 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col1a1P11087 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col1a1P11087 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col1a1P11087 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC19.96■□□□□ 0.79
Col1a1P11087 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col1a1P11087 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Col1a1P11087 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
Col1a1P11087 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col1a1P11087 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC19.95■□□□□ 0.78
Col1a1P11087 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC19.95■□□□□ 0.78
Col1a1P11087 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col1a1P11087 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col1a1P11087 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Col1a1P11087 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms