Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prom1O54990 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prom1O54990 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prom1O54990 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Prom1O54990 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Prom1O54990 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Gm44771-201ENSMUST00000206975 626 ntBASIC18.85■□□□□ 0.61
Prom1O54990 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Prom1O54990 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
Prom1O54990 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.85■□□□□ 0.61
Prom1O54990 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Prom1O54990 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Prom1O54990 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Prom1O54990 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Prom1O54990 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Prom1O54990 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC18.84■□□□□ 0.61
Prom1O54990 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
Prom1O54990 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Prom1O54990 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.84■□□□□ 0.61
Prom1O54990 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Prom1O54990 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Prom1O54990 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Prom1O54990 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
Prom1O54990 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC18.83■□□□□ 0.6
Prom1O54990 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.6
Prom1O54990 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.83■□□□□ 0.6
Prom1O54990 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Prom1O54990 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.83■□□□□ 0.6
Prom1O54990 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Gm13186-201ENSMUST00000118031 316 ntBASIC18.82■□□□□ 0.6
Prom1O54990 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Prom1O54990 AC124569.2-201ENSMUST00000225998 818 ntBASIC18.82■□□□□ 0.6
Prom1O54990 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Prom1O54990 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.82■□□□□ 0.6
Prom1O54990 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Prom1O54990 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.81■□□□□ 0.6
Prom1O54990 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.81■□□□□ 0.6
Prom1O54990 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.81■□□□□ 0.6
Prom1O54990 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Prom1O54990 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Prom1O54990 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Prom1O54990 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prom1O54990 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prom1O54990 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prom1O54990 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prom1O54990 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Prom1O54990 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Prom1O54990 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms