Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Hmgb3O54879 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC14.24□□□□□ -0.13
Hmgb3O54879 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Hmgb3O54879 CT010467.1-202ENSMUST00000205406 714 ntBASIC14.24□□□□□ -0.13
Hmgb3O54879 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Hmgb3O54879 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Hmgb3O54879 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC14.24□□□□□ -0.13
Hmgb3O54879 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Hmgb3O54879 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Hmgb3O54879 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Hmgb3O54879 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
Hmgb3O54879 AC160393.1-201ENSMUST00000218378 1279 ntBASIC14.23□□□□□ -0.13
Hmgb3O54879 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
Hmgb3O54879 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Cxcl14-202ENSMUST00000224801 1467 ntBASIC14.23□□□□□ -0.13
Hmgb3O54879 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Hmgb3O54879 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC14.22□□□□□ -0.13
Hmgb3O54879 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Gm37563-201ENSMUST00000192580 1513 ntBASIC14.22□□□□□ -0.13
Hmgb3O54879 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.22□□□□□ -0.13
Hmgb3O54879 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Gm14281-201ENSMUST00000121700 1294 ntBASIC14.22□□□□□ -0.13
Hmgb3O54879 Gm26833-201ENSMUST00000180899 440 ntBASIC14.22□□□□□ -0.13
Hmgb3O54879 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
Hmgb3O54879 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC14.22□□□□□ -0.13
Hmgb3O54879 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Hmgb3O54879 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC14.22□□□□□ -0.13
Hmgb3O54879 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Hmgb3O54879 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Hmgb3O54879 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC14.21□□□□□ -0.13
Hmgb3O54879 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Hmgb3O54879 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Hmgb3O54879 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Hmgb3O54879 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC14.21□□□□□ -0.13
Hmgb3O54879 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Hmgb3O54879 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hmgb3O54879 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Hmgb3O54879 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Hmgb3O54879 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgb3O54879 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.14
Hmgb3O54879 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Hmgb3O54879 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.21□□□□□ -0.14
Hmgb3O54879 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Gm26596-201ENSMUST00000180464 2655 ntBASIC14.2□□□□□ -0.14
Hmgb3O54879 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hmgb3O54879 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms